These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

309 related articles for article (PubMed ID: 33911078)

  • 1. Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.
    Kronenberg ZN; Rhie A; Koren S; Concepcion GT; Peluso P; Munson KM; Porubsky D; Kuhn K; Mueller KA; Low WY; Hiendleder S; Fedrigo O; Liachko I; Hall RJ; Phillippy AM; Eichler EE; Williams JL; Smith TPL; Jarvis ED; Sullivan ST; Kingan SB
    Nat Commun; 2021 Apr; 12(1):1935. PubMed ID: 33911078
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.
    Roach MJ; Schmidt SA; Borneman AR
    BMC Bioinformatics; 2018 Nov; 19(1):460. PubMed ID: 30497373
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Physical separation of haplotypes in dikaryons allows benchmarking of phasing accuracy in Nanopore and HiFi assemblies with Hi-C data.
    Duan H; Jones AW; Hewitt T; Mackenzie A; Hu Y; Sharp A; Lewis D; Mago R; Upadhyaya NM; Rathjen JP; Stone EA; Schwessinger B; Figueroa M; Dodds PN; Periyannan S; Sperschneider J
    Genome Biol; 2022 Mar; 23(1):84. PubMed ID: 35337367
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads.
    Porubsky D; Ebert P; Audano PA; Vollger MR; Harvey WT; Marijon P; Ebler J; Munson KM; Sorensen M; Sulovari A; Haukness M; Ghareghani M; ; Lansdorp PM; Paten B; Devine SE; Sanders AD; Lee C; Chaisson MJP; Korbel JO; Eichler EE; Marschall T
    Nat Biotechnol; 2021 Mar; 39(3):302-308. PubMed ID: 33288906
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Genome assembly and haplotyping with Hi-C.
    Korbel JO; Lee C
    Nat Biotechnol; 2013 Dec; 31(12):1099-101. PubMed ID: 24316648
    [No Abstract]   [Full Text] [Related]  

  • 6. HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies.
    Edge P; Bafna V; Bansal V
    Genome Res; 2017 May; 27(5):801-812. PubMed ID: 27940952
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes.
    Bansal V
    Bioinformatics; 2019 Jul; 35(14):i242-i248. PubMed ID: 31510646
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Benchmarking multi-platform sequencing technologies for human genome assembly.
    Wang J; Veldsman WP; Fang X; Huang Y; Xie X; Lyu A; Zhang L
    Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37594299
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Graphasing: phasing diploid genome assembly graphs with single-cell strand sequencing.
    Henglin M; Ghareghani M; Harvey WT; Porubsky D; Koren S; Eichler EE; Ebert P; Marschall T
    Genome Biol; 2024 Oct; 25(1):265. PubMed ID: 39390579
    [TBL] [Abstract][Full Text] [Related]  

  • 10. De novo assembly and phasing of a Korean human genome.
    Seo JS; Rhie A; Kim J; Lee S; Sohn MH; Kim CU; Hastie A; Cao H; Yun JY; Kim J; Kuk J; Park GH; Kim J; Ryu H; Kim J; Roh M; Baek J; Hunkapiller MW; Korlach J; Shin JY; Kim C
    Nature; 2016 Oct; 538(7624):243-247. PubMed ID: 27706134
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A Fosmid Pool-Based Next Generation Sequencing Approach to Haplotype-Resolve Whole Genomes.
    Suk EK; Schulz S; Mentrup B; Huebsch T; Duitama J; Hoehe MR
    Methods Mol Biol; 2017; 1551():223-269. PubMed ID: 28138850
    [TBL] [Abstract][Full Text] [Related]  

  • 12. HapCUT2: A Method for Phasing Genomes Using Experimental Sequence Data.
    Bansal V
    Methods Mol Biol; 2023; 2590():139-147. PubMed ID: 36335497
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
    Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
    Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Haplotyping-Assisted Diploid Assembly and Variant Detection with Linked Reads.
    Hu Y; Yang C; Zhang L; Zhou X
    Methods Mol Biol; 2023; 2590():161-182. PubMed ID: 36335499
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.
    Shafin K; Pesout T; Chang PC; Nattestad M; Kolesnikov A; Goel S; Baid G; Kolmogorov M; Eizenga JM; Miga KH; Carnevali P; Jain M; Carroll A; Paten B
    Nat Methods; 2021 Nov; 18(11):1322-1332. PubMed ID: 34725481
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A haplotype-aware de novo assembly of related individuals using pedigree sequence graph.
    Garg S; Aach J; Li H; Sebenius I; Durbin R; Church G
    Bioinformatics; 2020 Apr; 36(8):2385-2392. PubMed ID: 31860070
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.
    Coombe L; Zhang J; Vandervalk BP; Chu J; Jackman SD; Birol I; Warren RL
    BMC Bioinformatics; 2018 Jun; 19(1):234. PubMed ID: 29925315
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes.
    Campoy JA; Sun H; Goel M; Jiao WB; Folz-Donahue K; Wang N; Rubio M; Liu C; Kukat C; Ruiz D; Huettel B; Schneeberger K
    Genome Biol; 2020 Dec; 21(1):306. PubMed ID: 33372615
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SpLitteR: diploid genome assembly using TELL-Seq linked-reads and assembly graphs.
    Tolstoganov I; Chen Z; Pevzner P; Korobeynikov A
    PeerJ; 2024; 12():e18050. PubMed ID: 39351368
    [TBL] [Abstract][Full Text] [Related]  

  • 20. trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios.
    Miller DB; Piccolo SR
    BMC Bioinformatics; 2021 Nov; 22(1):559. PubMed ID: 34809557
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.