271 related articles for article (PubMed ID: 33911078)
1. Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.
Kronenberg ZN; Rhie A; Koren S; Concepcion GT; Peluso P; Munson KM; Porubsky D; Kuhn K; Mueller KA; Low WY; Hiendleder S; Fedrigo O; Liachko I; Hall RJ; Phillippy AM; Eichler EE; Williams JL; Smith TPL; Jarvis ED; Sullivan ST; Kingan SB
Nat Commun; 2021 Apr; 12(1):1935. PubMed ID: 33911078
[TBL] [Abstract][Full Text] [Related]
2. Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.
Roach MJ; Schmidt SA; Borneman AR
BMC Bioinformatics; 2018 Nov; 19(1):460. PubMed ID: 30497373
[TBL] [Abstract][Full Text] [Related]
3. Physical separation of haplotypes in dikaryons allows benchmarking of phasing accuracy in Nanopore and HiFi assemblies with Hi-C data.
Duan H; Jones AW; Hewitt T; Mackenzie A; Hu Y; Sharp A; Lewis D; Mago R; Upadhyaya NM; Rathjen JP; Stone EA; Schwessinger B; Figueroa M; Dodds PN; Periyannan S; Sperschneider J
Genome Biol; 2022 Mar; 23(1):84. PubMed ID: 35337367
[TBL] [Abstract][Full Text] [Related]
4. Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads.
Porubsky D; Ebert P; Audano PA; Vollger MR; Harvey WT; Marijon P; Ebler J; Munson KM; Sorensen M; Sulovari A; Haukness M; Ghareghani M; ; Lansdorp PM; Paten B; Devine SE; Sanders AD; Lee C; Chaisson MJP; Korbel JO; Eichler EE; Marschall T
Nat Biotechnol; 2021 Mar; 39(3):302-308. PubMed ID: 33288906
[TBL] [Abstract][Full Text] [Related]
5. Genome assembly and haplotyping with Hi-C.
Korbel JO; Lee C
Nat Biotechnol; 2013 Dec; 31(12):1099-101. PubMed ID: 24316648
[No Abstract] [Full Text] [Related]
6. HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies.
Edge P; Bafna V; Bansal V
Genome Res; 2017 May; 27(5):801-812. PubMed ID: 27940952
[TBL] [Abstract][Full Text] [Related]
7. Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes.
Bansal V
Bioinformatics; 2019 Jul; 35(14):i242-i248. PubMed ID: 31510646
[TBL] [Abstract][Full Text] [Related]
8. Benchmarking multi-platform sequencing technologies for human genome assembly.
Wang J; Veldsman WP; Fang X; Huang Y; Xie X; Lyu A; Zhang L
Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37594299
[TBL] [Abstract][Full Text] [Related]
9. De novo assembly and phasing of a Korean human genome.
Seo JS; Rhie A; Kim J; Lee S; Sohn MH; Kim CU; Hastie A; Cao H; Yun JY; Kim J; Kuk J; Park GH; Kim J; Ryu H; Kim J; Roh M; Baek J; Hunkapiller MW; Korlach J; Shin JY; Kim C
Nature; 2016 Oct; 538(7624):243-247. PubMed ID: 27706134
[TBL] [Abstract][Full Text] [Related]
10. A Fosmid Pool-Based Next Generation Sequencing Approach to Haplotype-Resolve Whole Genomes.
Suk EK; Schulz S; Mentrup B; Huebsch T; Duitama J; Hoehe MR
Methods Mol Biol; 2017; 1551():223-269. PubMed ID: 28138850
[TBL] [Abstract][Full Text] [Related]
11. HapCUT2: A Method for Phasing Genomes Using Experimental Sequence Data.
Bansal V
Methods Mol Biol; 2023; 2590():139-147. PubMed ID: 36335497
[TBL] [Abstract][Full Text] [Related]
12. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
[TBL] [Abstract][Full Text] [Related]
13. Haplotyping-Assisted Diploid Assembly and Variant Detection with Linked Reads.
Hu Y; Yang C; Zhang L; Zhou X
Methods Mol Biol; 2023; 2590():161-182. PubMed ID: 36335499
[TBL] [Abstract][Full Text] [Related]
14. Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads.
Shafin K; Pesout T; Chang PC; Nattestad M; Kolesnikov A; Goel S; Baid G; Kolmogorov M; Eizenga JM; Miga KH; Carnevali P; Jain M; Carroll A; Paten B
Nat Methods; 2021 Nov; 18(11):1322-1332. PubMed ID: 34725481
[TBL] [Abstract][Full Text] [Related]
15. A haplotype-aware de novo assembly of related individuals using pedigree sequence graph.
Garg S; Aach J; Li H; Sebenius I; Durbin R; Church G
Bioinformatics; 2020 Apr; 36(8):2385-2392. PubMed ID: 31860070
[TBL] [Abstract][Full Text] [Related]
16. ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.
Coombe L; Zhang J; Vandervalk BP; Chu J; Jackman SD; Birol I; Warren RL
BMC Bioinformatics; 2018 Jun; 19(1):234. PubMed ID: 29925315
[TBL] [Abstract][Full Text] [Related]
17. Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes.
Campoy JA; Sun H; Goel M; Jiao WB; Folz-Donahue K; Wang N; Rubio M; Liu C; Kukat C; Ruiz D; Huettel B; Schneeberger K
Genome Biol; 2020 Dec; 21(1):306. PubMed ID: 33372615
[TBL] [Abstract][Full Text] [Related]
18. trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios.
Miller DB; Piccolo SR
BMC Bioinformatics; 2021 Nov; 22(1):559. PubMed ID: 34809557
[TBL] [Abstract][Full Text] [Related]
19. Long-read-based single sperm genome sequencing for chromosome-wide haplotype phasing of both SNPs and SVs.
Xie H; Li W; Guo Y; Su X; Chen K; Wen L; Tang F
Nucleic Acids Res; 2023 Aug; 51(15):8020-8034. PubMed ID: 37351613
[TBL] [Abstract][Full Text] [Related]
20. Gamete Binning to Achieve Haplotype-Resolved Genome Assembly.
Sun H; Campoy JA; Schneeberger K
Methods Mol Biol; 2023; 2590():201-218. PubMed ID: 36335501
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]