BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

125 related articles for article (PubMed ID: 33913709)

  • 1. Long-Range Supercoiling-Mediated RNA Polymerase Cooperation in Transcription.
    Klindziuk A; Kolomeisky AB
    J Phys Chem B; 2021 May; 125(18):4692-4700. PubMed ID: 33913709
    [TBL] [Abstract][Full Text] [Related]  

  • 2. DNA supercoiling-mediated collective behavior of co-transcribing RNA polymerases.
    Tripathi S; Brahmachari S; Onuchic JN; Levine H
    Nucleic Acids Res; 2022 Feb; 50(3):1269-1279. PubMed ID: 34951454
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A spatially resolved stochastic model reveals the role of supercoiling in transcription regulation.
    Geng Y; Bohrer CH; Yehya N; Hendrix H; Shachaf L; Liu J; Xiao J; Roberts E
    PLoS Comput Biol; 2022 Sep; 18(9):e1009788. PubMed ID: 36121892
    [TBL] [Abstract][Full Text] [Related]  

  • 4. How does supercoiling regulation on a battery of RNA polymerases impact on bacterial transcription bursting?
    Jing X; Loskot P; Yu J
    Phys Biol; 2018 Sep; 15(6):066007. PubMed ID: 30091721
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RNA Polymerase interactions and elongation rate.
    Belitsky V; Schütz GM
    J Theor Biol; 2019 Feb; 462():370-380. PubMed ID: 30496746
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Nonequilibrium dynamics and action at a distance in transcriptionally driven DNA supercoiling.
    Fosado YAG; Michieletto D; Brackley CA; Marenduzzo D
    Proc Natl Acad Sci U S A; 2021 Mar; 118(10):. PubMed ID: 33649196
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Transcription factor regulation of RNA polymerase's torque generation capacity.
    Ma J; Tan C; Gao X; Fulbright RM; Roberts JW; Wang MD
    Proc Natl Acad Sci U S A; 2019 Feb; 116(7):2583-2588. PubMed ID: 30635423
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Supercoiling-mediated feedback rapidly couples and tunes transcription.
    Johnstone CP; Galloway KE
    Cell Rep; 2022 Oct; 41(3):111492. PubMed ID: 36261020
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A Mechanochemical Model of Transcriptional Bursting.
    Klindziuk A; Meadowcroft B; Kolomeisky AB
    Biophys J; 2020 Mar; 118(5):1213-1220. PubMed ID: 32049059
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Long-Distance Cooperative and Antagonistic RNA Polymerase Dynamics via DNA Supercoiling.
    Kim S; Beltran B; Irnov I; Jacobs-Wagner C
    Cell; 2019 Sep; 179(1):106-119.e16. PubMed ID: 31539491
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Dynamics of DNA supercoiling by transcription in Escherichia coli.
    Cook DN; Ma D; Pon NG; Hearst JE
    Proc Natl Acad Sci U S A; 1992 Nov; 89(22):10603-7. PubMed ID: 1332053
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The Role of Supercoiling in the Motor Activity of RNA Polymerases.
    Lesne A; Victor JM; Bertrand E; Basyuk E; Barbi M
    Methods Mol Biol; 2018; 1805():215-232. PubMed ID: 29971720
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Effects of RNA polymerase modifications on transcription-induced negative supercoiling and associated R-loop formation.
    Broccoli S; Rallu F; Sanscartier P; Cerritelli SM; Crouch RJ; Drolet M
    Mol Microbiol; 2004 Jun; 52(6):1769-79. PubMed ID: 15186424
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Characterization of molecular interactions between Escherichia coli RNA polymerase and topoisomerase I by molecular simulations.
    Tiwari PB; Chapagain PP; Banda S; Darici Y; Üren A; Tse-Dinh YC
    FEBS Lett; 2016 Sep; 590(17):2844-51. PubMed ID: 27448274
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Single-molecule visualization of twin-supercoiled domains generated during transcription.
    Janissen R; Barth R; Polinder M; van der Torre J; Dekker C
    Nucleic Acids Res; 2024 Feb; 52(4):1677-1687. PubMed ID: 38084930
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Collective polymerase dynamics emerge from DNA supercoiling during transcription.
    Sevier SA; Hormoz S
    Biophys J; 2022 Nov; 121(21):4153-4165. PubMed ID: 36171726
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Probing Mechanisms of Transcription Elongation Through Cell-to-Cell Variability of RNA Polymerase.
    Ali MZ; Choubey S; Das D; Brewster RC
    Biophys J; 2020 Apr; 118(7):1769-1781. PubMed ID: 32101716
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Model of gene transcription including the return of a RNA polymerase to the beginning of a transcriptional cycle.
    Zhdanov VP
    Phys Rev E Stat Nonlin Soft Matter Phys; 2009 Nov; 80(5 Pt 1):051925. PubMed ID: 20365024
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Sequence-dependent kinetic model for transcription elongation by RNA polymerase.
    Bai L; Shundrovsky A; Wang MD
    J Mol Biol; 2004 Nov; 344(2):335-49. PubMed ID: 15522289
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A biophysical model of supercoiling dependent transcription predicts a structural aspect to gene regulation.
    Bohrer CH; Roberts E
    BMC Biophys; 2015; 9():2. PubMed ID: 26855771
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.