BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

254 related articles for article (PubMed ID: 33920780)

  • 1. Predicting TCR-Epitope Binding Specificity Using Deep Metric Learning and Multimodal Learning.
    Luu AM; Leistico JR; Miller T; Kim S; Song JS
    Genes (Basel); 2021 Apr; 12(4):. PubMed ID: 33920780
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A structural-based machine learning method to classify binding affinities between TCR and peptide-MHC complexes.
    Dhusia K; Su Z; Wu Y
    Mol Immunol; 2021 Nov; 139():76-86. PubMed ID: 34455212
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Structure-based prediction of T cell receptor:peptide-MHC interactions.
    Bradley P
    Elife; 2023 Jan; 12():. PubMed ID: 36661395
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Predicting TCR sequences for unseen antigen epitopes using structural and sequence features.
    Ji H; Wang XX; Zhang Q; Zhang C; Zhang HM
    Brief Bioinform; 2024 Mar; 25(3):. PubMed ID: 38711371
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Predicting CD4 T-cell epitopes based on antigen cleavage, MHCII presentation, and TCR recognition.
    Schneidman-Duhovny D; Khuri N; Dong GQ; Winter MB; Shifrut E; Friedman N; Craik CS; Pratt KP; Paz P; Aswad F; Sali A
    PLoS One; 2018; 13(11):e0206654. PubMed ID: 30399156
    [TBL] [Abstract][Full Text] [Related]  

  • 6. TEINet: a deep learning framework for prediction of TCR-epitope binding specificity.
    Jiang Y; Huo M; Cheng Li S
    Brief Bioinform; 2023 Mar; 24(2):. PubMed ID: 36907658
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Accurate TCR-pMHC interaction prediction using a BERT-based transfer learning method.
    Zhang J; Ma W; Yao H
    Brief Bioinform; 2023 Nov; 25(1):. PubMed ID: 38040492
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Identification of the cognate peptide-MHC target of T cell receptors using molecular modeling and force field scoring.
    Lanzarotti E; Marcatili P; Nielsen M
    Mol Immunol; 2018 Feb; 94():91-97. PubMed ID: 29288899
    [TBL] [Abstract][Full Text] [Related]  

  • 9. TEPCAM: Prediction of T-cell receptor-epitope binding specificity via interpretable deep learning.
    Chen J; Zhao B; Lin S; Sun H; Mao X; Wang M; Chu Y; Hong L; Wei DQ; Li M; Xiong Y
    Protein Sci; 2024 Jan; 33(1):e4841. PubMed ID: 37983648
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Prediction of Specific TCR-Peptide Binding From Large Dictionaries of TCR-Peptide Pairs.
    Springer I; Besser H; Tickotsky-Moskovitz N; Dvorkin S; Louzoun Y
    Front Immunol; 2020; 11():1803. PubMed ID: 32983088
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Deep learning predictions of TCR-epitope interactions reveal epitope-specific chains in dual alpha T cells.
    Croce G; Bobisse S; Moreno DL; Schmidt J; Guillame P; Harari A; Gfeller D
    Nat Commun; 2024 Apr; 15(1):3211. PubMed ID: 38615042
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MPID-T: database for sequence-structure-function information on T-cell receptor/peptide/MHC interactions.
    Tong JC; Kong L; Tan TW; Ranganathan S
    Appl Bioinformatics; 2006; 5(2):111-4. PubMed ID: 16722775
    [TBL] [Abstract][Full Text] [Related]  

  • 13. An Attention Based Bidirectional LSTM Method to Predict the Binding of TCR and Epitope.
    Bi J; Zheng Y; Wang C; Ding Y
    IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(6):3272-3280. PubMed ID: 34559661
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Systematic Determination of TCR-Antigen and Peptide-MHC Binding Kinetics among Field Variants of a
    Svitek N; Saya R; Zhang H; Nene V; Steinaa L
    J Immunol; 2022 Feb; 208(3):549-561. PubMed ID: 35031580
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Mutations in a dominant Nef epitope of simian immunodeficiency virus diminish TCR:epitope peptide affinity but not epitope peptide:MHC class I binding.
    Cale EM; Bazick HS; Rianprakaisang TA; Alam SM; Letvin NL
    J Immunol; 2011 Sep; 187(6):3300-13. PubMed ID: 21841125
    [TBL] [Abstract][Full Text] [Related]  

  • 16. NetTCR-2.1: Lessons and guidance on how to develop models for TCR specificity predictions.
    Montemurro A; Jessen LE; Nielsen M
    Front Immunol; 2022; 13():1055151. PubMed ID: 36561755
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Functional evidence that conserved TCR CDR alpha 3 loop docking governs the cross-recognition of closely related peptide:class I complexes.
    Messaoudi I; LeMaoult J; Metzner BM; Miley MJ; Fremont DH; Nikolich-Zugich J
    J Immunol; 2001 Jul; 167(2):836-43. PubMed ID: 11441090
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Intercellular and intracellular events following the MHC-unrestricted TCR recognition of a tumor-specific peptide epitope on the epithelial antigen MUC1.
    Magarian-Blander J; Ciborowski P; Hsia S; Watkins SC; Finn OJ
    J Immunol; 1998 Apr; 160(7):3111-20. PubMed ID: 9531265
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Hepatitis E Virus (HEV)-Specific T Cell Receptor Cross-Recognition: Implications for Immunotherapy.
    Soon CF; Zhang S; Suneetha PV; Antunes DA; Manns MP; Raha S; Schultze-Florey C; Prinz I; Wedemeyer H; Sällberg Chen M; Cornberg M
    Front Immunol; 2019; 10():2076. PubMed ID: 31552033
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A molecular basis for how a single TCR interfaces multiple ligands.
    Boesteanu A; Brehm M; Mylin LM; Christianson GJ; Tevethia SS; Roopenian DC; Joyce S
    J Immunol; 1998 Nov; 161(9):4719-27. PubMed ID: 9794402
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.