355 related articles for article (PubMed ID: 33924545)
1. OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters.
García-López R; Cornejo-Granados F; Lopez-Zavala AA; Cota-Huízar A; Sotelo-Mundo RR; Gómez-Gil B; Ochoa-Leyva A
Genes (Basel); 2021 Apr; 12(4):. PubMed ID: 33924545
[TBL] [Abstract][Full Text] [Related]
2. Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters.
Schloss PD
mSphere; 2021 Aug; 6(4):e0019121. PubMed ID: 34287003
[TBL] [Abstract][Full Text] [Related]
3. [Biases on community structure during DNA extraction of shrimp intestinal microbiota revealed by high-throughput sequencing].
Wen C; He Y; Xue M; Liang H; Dong J
Wei Sheng Wu Xue Bao; 2016 Jan; 56(1):130-42. PubMed ID: 27305787
[TBL] [Abstract][Full Text] [Related]
4. Deciphering intra-species bacterial diversity of meat and seafood spoilage microbiota using gyrB amplicon sequencing: A comparative analysis with 16S rDNA V3-V4 amplicon sequencing.
Poirier S; Rué O; Peguilhan R; Coeuret G; Zagorec M; Champomier-Vergès MC; Loux V; Chaillou S
PLoS One; 2018; 13(9):e0204629. PubMed ID: 30252901
[TBL] [Abstract][Full Text] [Related]
5. Intestinal Microbiota of White Shrimp Penaeus vannamei Under Intensive Cultivation Conditions in Ecuador.
Gainza O; Ramírez C; Ramos AS; Romero J
Microb Ecol; 2018 Apr; 75(3):562-568. PubMed ID: 28929202
[TBL] [Abstract][Full Text] [Related]
6. Primary progressive multiple sclerosis in a Russian cohort: relationship with gut bacterial diversity.
Kozhieva M; Naumova N; Alikina T; Boyko A; Vlassov V; Kabilov MR
BMC Microbiol; 2019 Dec; 19(1):309. PubMed ID: 31888483
[TBL] [Abstract][Full Text] [Related]
7. Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products.
Xue Z; Kable ME; Marco ML
mSphere; 2018 Oct; 3(5):. PubMed ID: 30333179
[TBL] [Abstract][Full Text] [Related]
8. Decontamination of 16S rRNA gene amplicon sequence datasets based on bacterial load assessment by qPCR.
Lazarevic V; Gaïa N; Girard M; Schrenzel J
BMC Microbiol; 2016 Apr; 16():73. PubMed ID: 27107811
[TBL] [Abstract][Full Text] [Related]
9. Ranking the biases: The choice of OTUs vs. ASVs in 16S rRNA amplicon data analysis has stronger effects on diversity measures than rarefaction and OTU identity threshold.
Chiarello M; McCauley M; Villéger S; Jackson CR
PLoS One; 2022; 17(2):e0264443. PubMed ID: 35202411
[TBL] [Abstract][Full Text] [Related]
10. Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing.
Abellan-Schneyder I; Matchado MS; Reitmeier S; Sommer A; Sewald Z; Baumbach J; List M; Neuhaus K
mSphere; 2021 Feb; 6(1):. PubMed ID: 33627512
[TBL] [Abstract][Full Text] [Related]
11. Sediment-associated microbial community profiling: sample pre-processing through sequential membrane filtration for 16S rRNA amplicon sequencing.
Serrana JM; Watanabe K
BMC Microbiol; 2022 Jan; 22(1):33. PubMed ID: 35057747
[TBL] [Abstract][Full Text] [Related]
12. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform.
Castelino M; Eyre S; Moat J; Fox G; Martin P; Ho P; Upton M; Barton A
BMC Microbiol; 2017 Jan; 17(1):23. PubMed ID: 28109256
[TBL] [Abstract][Full Text] [Related]
13. Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.
Franzén O; Hu J; Bao X; Itzkowitz SH; Peter I; Bashir A
Microbiome; 2015 Oct; 3():43. PubMed ID: 26434730
[TBL] [Abstract][Full Text] [Related]
14. Bacterial community characterization of water and intestine of the shrimp Litopenaeus stylirostris in a biofloc system.
Cardona E; Gueguen Y; Magré K; Lorgeoux B; Piquemal D; Pierrat F; Noguier F; Saulnier D
BMC Microbiol; 2016 Jul; 16(1):157. PubMed ID: 27435866
[TBL] [Abstract][Full Text] [Related]
15. Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets.
F Escapa I; Huang Y; Chen T; Lin M; Kokaras A; Dewhirst FE; Lemon KP
Microbiome; 2020 May; 8(1):65. PubMed ID: 32414415
[TBL] [Abstract][Full Text] [Related]
16. Biological observations in microbiota analysis are robust to the choice of 16S rRNA gene sequencing processing algorithm: case study on human milk microbiota.
Moossavi S; Atakora F; Fehr K; Khafipour E
BMC Microbiol; 2020 Sep; 20(1):290. PubMed ID: 32948144
[TBL] [Abstract][Full Text] [Related]
17. [Analysis of the dynamic changes in gut microbiota in patients with extremely severe burns by 16S ribosomal RNA high-throughput sequencing technology].
Pan YY; Fan YF; Li JL; Cui SY; Huang N; Jin GY; Chen C; Zhang C
Zhonghua Shao Shang Za Zhi; 2020 Dec; 36(12):1159-1166. PubMed ID: 33379852
[No Abstract] [Full Text] [Related]
18. Taxonomic annotation of 16S rRNA sequences of pig intestinal samples using MG-RAST and QIIME2 generated different microbiota compositions.
Lima J; Manning T; Rutherford KM; Baima ET; Dewhurst RJ; Walsh P; Roehe R
J Microbiol Methods; 2021 Jul; 186():106235. PubMed ID: 33974954
[TBL] [Abstract][Full Text] [Related]
19. bioOTU: An Improved Method for Simultaneous Taxonomic Assignments and Operational Taxonomic Units Clustering of 16s rRNA Gene Sequences.
Chen SY; Deng F; Huang Y; Jia X; Liu YP; Lai SJ
J Comput Biol; 2016 Apr; 23(4):229-38. PubMed ID: 26950196
[TBL] [Abstract][Full Text] [Related]
20. Characterization of intestinal bacteria in wild and domesticated adult black tiger shrimp (Penaeus monodon).
Rungrassamee W; Klanchui A; Maibunkaew S; Chaiyapechara S; Jiravanichpaisal P; Karoonuthaisiri N
PLoS One; 2014; 9(3):e91853. PubMed ID: 24618668
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
