These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

453 related articles for article (PubMed ID: 33927415)

  • 1. Profiling the genetic determinants of chromatin accessibility with scalable single-cell CRISPR screens.
    Liscovitch-Brauer N; Montalbano A; Deng J; Méndez-Mancilla A; Wessels HH; Moss NG; Kung CY; Sookdeo A; Guo X; Geller E; Jaini S; Smibert P; Sanjana NE
    Nat Biotechnol; 2021 Oct; 39(10):1270-1277. PubMed ID: 33927415
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Coupled Single-Cell CRISPR Screening and Epigenomic Profiling Reveals Causal Gene Regulatory Networks.
    Rubin AJ; Parker KR; Satpathy AT; Qi Y; Wu B; Ong AJ; Mumbach MR; Ji AL; Kim DS; Cho SW; Zarnegar BJ; Greenleaf WJ; Chang HY; Khavari PA
    Cell; 2019 Jan; 176(1-2):361-376.e17. PubMed ID: 30580963
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Developments in high-throughput functional epigenomics: CRISPR-single-cell assay for transposase-accessible chromatin using sequencing screens.
    E Yan R; P Greenfield J; Dahmane N
    Epigenomics; 2022 Jun; 14(11):645-649. PubMed ID: 35574596
    [TBL] [Abstract][Full Text] [Related]  

  • 4. High-throughput single-cell chromatin accessibility CRISPR screens enable unbiased identification of regulatory networks in cancer.
    Pierce SE; Granja JM; Greenleaf WJ
    Nat Commun; 2021 May; 12(1):2969. PubMed ID: 34016988
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Scalable, multimodal profiling of chromatin accessibility, gene expression and protein levels in single cells.
    Mimitou EP; Lareau CA; Chen KY; Zorzetto-Fernandes AL; Hao Y; Takeshima Y; Luo W; Huang TS; Yeung BZ; Papalexi E; Thakore PI; Kibayashi T; Wing JB; Hata M; Satija R; Nazor KL; Sakaguchi S; Ludwig LS; Sankaran VG; Regev A; Smibert P
    Nat Biotechnol; 2021 Oct; 39(10):1246-1258. PubMed ID: 34083792
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Single-cell chromatin accessibility reveals principles of regulatory variation.
    Buenrostro JD; Wu B; Litzenburger UM; Ruff D; Gonzales ML; Snyder MP; Chang HY; Greenleaf WJ
    Nature; 2015 Jul; 523(7561):486-90. PubMed ID: 26083756
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Targeted Perturb-seq enables genome-scale genetic screens in single cells.
    Schraivogel D; Gschwind AR; Milbank JH; Leonce DR; Jakob P; Mathur L; Korbel JO; Merten CA; Velten L; Steinmetz LM
    Nat Methods; 2020 Jun; 17(6):629-635. PubMed ID: 32483332
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Measuring Chromatin Accessibility: ATAC-Seq.
    Sahu SK; Basu A; Tiwari VK
    Methods Mol Biol; 2021; 2351():105-121. PubMed ID: 34382186
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Next-generation forward genetic screens: uniting high-throughput perturbations with single-cell analysis.
    Morris JA; Sun JS; Sanjana NE
    Trends Genet; 2024 Feb; 40(2):118-133. PubMed ID: 37989654
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens.
    Dixit A; Parnas O; Li B; Chen J; Fulco CP; Jerby-Arnon L; Marjanovic ND; Dionne D; Burks T; Raychowdhury R; Adamson B; Norman TM; Lander ES; Weissman JS; Friedman N; Regev A
    Cell; 2016 Dec; 167(7):1853-1866.e17. PubMed ID: 27984732
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Pooled CRISPR screening with single-cell transcriptome readout.
    Datlinger P; Rendeiro AF; Schmidl C; Krausgruber T; Traxler P; Klughammer J; Schuster LC; Kuchler A; Alpar D; Bock C
    Nat Methods; 2017 Mar; 14(3):297-301. PubMed ID: 28099430
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing.
    O'Connell BL; Nichols RV; Pokholok D; Thomas J; Acharya SN; Nishida A; Thornton CA; Co M; Fields AJ; Steemers FJ; Adey AC
    Genome Res; 2023 Feb; 33(2):208-217. PubMed ID: 36792372
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Joint profiling of chromatin accessibility and gene expression in thousands of single cells.
    Cao J; Cusanovich DA; Ramani V; Aghamirzaie D; Pliner HA; Hill AJ; Daza RM; McFaline-Figueroa JL; Packer JS; Christiansen L; Steemers FJ; Adey AC; Trapnell C; Shendure J
    Science; 2018 Sep; 361(6409):1380-1385. PubMed ID: 30166440
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The landscape of accessible chromatin in mammalian preimplantation embryos.
    Wu J; Huang B; Chen H; Yin Q; Liu Y; Xiang Y; Zhang B; Liu B; Wang Q; Xia W; Li W; Li Y; Ma J; Peng X; Zheng H; Ming J; Zhang W; Zhang J; Tian G; Xu F; Chang Z; Na J; Yang X; Xie W
    Nature; 2016 Jun; 534(7609):652-7. PubMed ID: 27309802
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Identification and Massively Parallel Characterization of Regulatory Elements Driving Neural Induction.
    Inoue F; Kreimer A; Ashuach T; Ahituv N; Yosef N
    Cell Stem Cell; 2019 Nov; 25(5):713-727.e10. PubMed ID: 31631012
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A rapid and robust method for single cell chromatin accessibility profiling.
    Chen X; Miragaia RJ; Natarajan KN; Teichmann SA
    Nat Commun; 2018 Dec; 9(1):5345. PubMed ID: 30559361
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Parallel bimodal single-cell sequencing of transcriptome and chromatin accessibility.
    Xing QR; Farran CAE; Zeng YY; Yi Y; Warrier T; Gautam P; Collins JJ; Xu J; Dröge P; Koh CG; Li H; Zhang LF; Loh YH
    Genome Res; 2020 Jul; 30(7):1027-1039. PubMed ID: 32699019
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.
    Cusanovich DA; Hill AJ; Aghamirzaie D; Daza RM; Pliner HA; Berletch JB; Filippova GN; Huang X; Christiansen L; DeWitt WS; Lee C; Regalado SG; Read DF; Steemers FJ; Disteche CM; Trapnell C; Shendure J
    Cell; 2018 Aug; 174(5):1309-1324.e18. PubMed ID: 30078704
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Model-based understanding of single-cell CRISPR screening.
    Duan B; Zhou C; Zhu C; Yu Y; Li G; Zhang S; Zhang C; Ye X; Ma H; Qu S; Zhang Z; Wang P; Sun S; Liu Q
    Nat Commun; 2019 May; 10(1):2233. PubMed ID: 31110232
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.
    Buenrostro JD; Wu B; Chang HY; Greenleaf WJ
    Curr Protoc Mol Biol; 2015 Jan; 109():21.29.1-21.29.9. PubMed ID: 25559105
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 23.