272 related articles for article (PubMed ID: 33950509)
1. Automated Workflow for Peptide-Level Quantitation from DIA/SWATH-MS Data.
Gupta S; Röst H
Methods Mol Biol; 2021; 2228():453-468. PubMed ID: 33950509
[TBL] [Abstract][Full Text] [Related]
2. QuantPipe: A User-Friendly Pipeline Software Tool for DIA Data Analysis Based on the OpenSWATH-PyProphet-TRIC Workflow.
Wang D; Gan G; Chen X; Zhong CQ
J Proteome Res; 2021 Jan; 20(1):1096-1102. PubMed ID: 33091296
[TBL] [Abstract][Full Text] [Related]
3. Automated SWATH Data Analysis Using Targeted Extraction of Ion Chromatograms.
Röst HL; Aebersold R; Schubert OT
Methods Mol Biol; 2017; 1550():289-307. PubMed ID: 28188537
[TBL] [Abstract][Full Text] [Related]
4. Optimization of Acquisition and Data-Processing Parameters for Improved Proteomic Quantification by Sequential Window Acquisition of All Theoretical Fragment Ion Mass Spectrometry.
Li S; Cao Q; Xiao W; Guo Y; Yang Y; Duan X; Shui W
J Proteome Res; 2017 Feb; 16(2):738-747. PubMed ID: 27995803
[TBL] [Abstract][Full Text] [Related]
5. Reproducibility, Specificity and Accuracy of Relative Quantification Using Spectral Library-based Data-independent Acquisition.
Barkovits K; Pacharra S; Pfeiffer K; Steinbach S; Eisenacher M; Marcus K; Uszkoreit J
Mol Cell Proteomics; 2020 Jan; 19(1):181-197. PubMed ID: 31699904
[TBL] [Abstract][Full Text] [Related]
6. Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial.
Ludwig C; Gillet L; Rosenberger G; Amon S; Collins BC; Aebersold R
Mol Syst Biol; 2018 Aug; 14(8):e8126. PubMed ID: 30104418
[TBL] [Abstract][Full Text] [Related]
7. SWATH Mass Spectrometry for Proteomics of Non-Depleted Plasma.
Krisp C; Molloy MP
Methods Mol Biol; 2017; 1619():373-383. PubMed ID: 28674897
[TBL] [Abstract][Full Text] [Related]
8. Extensive and Accurate Benchmarking of DIA Acquisition Methods and Software Tools Using a Complex Proteomic Standard.
Gotti C; Roux-Dalvai F; Joly-Beauparlant C; Mangnier L; Leclercq M; Droit A
J Proteome Res; 2021 Oct; 20(10):4801-4814. PubMed ID: 34472865
[TBL] [Abstract][Full Text] [Related]
9. Micro-Data-Independent Acquisition for High-Throughput Proteomics and Sensitive Peptide Mass Spectrum Identification.
Heaven MR; Cobbs AL; Nei YW; Gutierrez DB; Herren AW; Gunawardena HP; Caprioli RM; Norris JL
Anal Chem; 2018 Aug; 90(15):8905-8911. PubMed ID: 29984981
[TBL] [Abstract][Full Text] [Related]
10. Comparison of Protein Quantification in a Complex Background by DIA and TMT Workflows with Fixed Instrument Time.
Muntel J; Kirkpatrick J; Bruderer R; Huang T; Vitek O; Ori A; Reiter L
J Proteome Res; 2019 Mar; 18(3):1340-1351. PubMed ID: 30726097
[TBL] [Abstract][Full Text] [Related]
11. DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics.
Tsou CC; Avtonomov D; Larsen B; Tucholska M; Choi H; Gingras AC; Nesvizhskii AI
Nat Methods; 2015 Mar; 12(3):258-64, 7 p following 264. PubMed ID: 25599550
[TBL] [Abstract][Full Text] [Related]
12. Identification of a Set of Conserved Eukaryotic Internal Retention Time Standards for Data-independent Acquisition Mass Spectrometry.
Parker SJ; Rost H; Rosenberger G; Collins BC; Malmström L; Amodei D; Venkatraman V; Raedschelders K; Van Eyk JE; Aebersold R
Mol Cell Proteomics; 2015 Oct; 14(10):2800-13. PubMed ID: 26199342
[TBL] [Abstract][Full Text] [Related]
13. High-throughput, in-depth and estimated absolute quantification of plasma proteome using data-independent acquisition/mass spectrometry ("HIAP-DIA").
Zhou Y; Tan Z; Xue P; Wang Y; Li X; Guan F
Proteomics; 2021 Mar; 21(5):e2000264. PubMed ID: 33460299
[TBL] [Abstract][Full Text] [Related]
14. Systematic Assessment of the Effect of Internal Library in Targeted Analysis of SWATH-MS.
Zhong CQ; Wu R; Chen X; Wu S; Shuai J; Han J
J Proteome Res; 2020 Jan; 19(1):477-492. PubMed ID: 31664839
[TBL] [Abstract][Full Text] [Related]
15. MSSort-DIA
Li Y; He Q; Guo H; Zhong CQ; Li X; Li Y; Han J; Shuai J
J Proteomics; 2022 May; 259():104542. PubMed ID: 35231660
[TBL] [Abstract][Full Text] [Related]
16. Removing the Hidden Data Dependency of DIA with Predicted Spectral Libraries.
Van Puyvelde B; Willems S; Gabriels R; Daled S; De Clerck L; Vande Casteele S; Staes A; Impens F; Deforce D; Martens L; Degroeve S; Dhaenens M
Proteomics; 2020 Feb; 20(3-4):e1900306. PubMed ID: 31981311
[TBL] [Abstract][Full Text] [Related]
17. Establishing a Custom-Fit Data-Independent Acquisition Method for Label-Free Proteomics.
Eggers B; Eisenacher M; Marcus K; Uszkoreit J
Methods Mol Biol; 2021; 2228():307-325. PubMed ID: 33950500
[TBL] [Abstract][Full Text] [Related]
18. Improving Protein Detection Confidence Using SWATH-Mass Spectrometry with Large Peptide Reference Libraries.
Wu JX; Pascovici D; Ignjatovic V; Song X; Krisp C; Molloy MP
Proteomics; 2017 Oct; 17(19):. PubMed ID: 28834274
[TBL] [Abstract][Full Text] [Related]
19. DIAlignR Provides Precise Retention Time Alignment Across Distant Runs in DIA and Targeted Proteomics.
Gupta S; Ahadi S; Zhou W; Röst H
Mol Cell Proteomics; 2019 Apr; 18(4):806-817. PubMed ID: 30705124
[TBL] [Abstract][Full Text] [Related]
20. Systematic evaluation of data-independent acquisition for sensitive and reproducible proteomics-a prototype design for a single injection assay.
Heaven MR; Funk AJ; Cobbs AL; Haffey WD; Norris JL; McCullumsmith RE; Greis KD
J Mass Spectrom; 2016 Jan; 51(1):1-11. PubMed ID: 26757066
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
