98 related articles for article (PubMed ID: 33961219)
1. Fast Phylogeny Reconstruction from Genomes of Closely Related Microbes.
Haubold B; Klötzl F
Methods Mol Biol; 2021; 2242():77-89. PubMed ID: 33961219
[TBL] [Abstract][Full Text] [Related]
2. andi: fast and accurate estimation of evolutionary distances between closely related genomes.
Haubold B; Klötzl F; Pfaffelhuber P
Bioinformatics; 2015 Apr; 31(8):1169-75. PubMed ID: 25504847
[TBL] [Abstract][Full Text] [Related]
3. A phylogenomic analysis of Escherichia coli / Shigella group: implications of genomic features associated with pathogenicity and ecological adaptation.
Zhang Y; Lin K
BMC Evol Biol; 2012 Sep; 12():174. PubMed ID: 22958895
[TBL] [Abstract][Full Text] [Related]
4. When whole-genome alignments just won't work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes.
Gardner SN; Hall BG
PLoS One; 2013; 8(12):e81760. PubMed ID: 24349125
[TBL] [Abstract][Full Text] [Related]
5. Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs).
Sims GE; Kim SH
Proc Natl Acad Sci U S A; 2011 May; 108(20):8329-34. PubMed ID: 21536867
[TBL] [Abstract][Full Text] [Related]
6. Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes.
Kaas RS; Friis C; Ussery DW; Aarestrup FM
BMC Genomics; 2012 Oct; 13():577. PubMed ID: 23114024
[TBL] [Abstract][Full Text] [Related]
7. Inferring Core Genome Phylogenies for Bacteria.
Keller A; Ankenbrand MJ
Methods Mol Biol; 2021; 2242():59-68. PubMed ID: 33961217
[TBL] [Abstract][Full Text] [Related]
8. Extensive genomic diversity in pathogenic Escherichia coli and Shigella Strains revealed by comparative genomic hybridization microarray.
Fukiya S; Mizoguchi H; Tobe T; Mori H
J Bacteriol; 2004 Jun; 186(12):3911-21. PubMed ID: 15175305
[TBL] [Abstract][Full Text] [Related]
9. Investigating the Relatedness of Enteroinvasive Escherichia coli to Other E. coli and Shigella Isolates by Using Comparative Genomics.
Hazen TH; Leonard SR; Lampel KA; Lacher DW; Maurelli AT; Rasko DA
Infect Immun; 2016 Aug; 84(8):2362-2371. PubMed ID: 27271741
[TBL] [Abstract][Full Text] [Related]
10. A coarse-graining, ultrametric approach to resolve the phylogeny of prokaryotic strains with frequent homologous recombination.
Pang TY
BMC Evol Biol; 2020 May; 20(1):52. PubMed ID: 32381044
[TBL] [Abstract][Full Text] [Related]
11. coliBASE: an online database for Escherichia coli, Shigella and Salmonella comparative genomics.
Chaudhuri RR; Khan AM; Pallen MJ
Nucleic Acids Res; 2004 Jan; 32(Database issue):D296-9. PubMed ID: 14681417
[TBL] [Abstract][Full Text] [Related]
12. Phylonium: fast estimation of evolutionary distances from large samples of similar genomes.
Klötzl F; Haubold B
Bioinformatics; 2020 Apr; 36(7):2040-2046. PubMed ID: 31790149
[TBL] [Abstract][Full Text] [Related]
13. The genomic signatures of Shigella evolution, adaptation and geographical spread.
The HC; Thanh DP; Holt KE; Thomson NR; Baker S
Nat Rev Microbiol; 2016 Apr; 14(4):235-50. PubMed ID: 26923111
[TBL] [Abstract][Full Text] [Related]
14. Inferring Phylogenomic Relationship of Microbes Using Scalable Alignment-Free Methods.
Bernard G; Stephens TG; González-Pech RA; Chan CX
Methods Mol Biol; 2021; 2242():69-76. PubMed ID: 33961218
[TBL] [Abstract][Full Text] [Related]
15. Phylogenetic Methods for Genome-Wide Association Studies in Bacteria.
Didelot X
Methods Mol Biol; 2021; 2242():205-220. PubMed ID: 33961226
[TBL] [Abstract][Full Text] [Related]
16. Co-phylog: an assembly-free phylogenomic approach for closely related organisms.
Yi H; Jin L
Nucleic Acids Res; 2013 Apr; 41(7):e75. PubMed ID: 23335788
[TBL] [Abstract][Full Text] [Related]
17. Comparative Genomics, from the Annotated Genome to Valuable Biological Information: A Case Study.
Zoledowska S; Motyka-Pomagruk A; Misztak A; Lojkowska E
Methods Mol Biol; 2021; 2242():91-112. PubMed ID: 33961220
[TBL] [Abstract][Full Text] [Related]
18. A genomic distance based on MUM indicates discontinuity between most bacterial species and genera.
Deloger M; El Karoui M; Petit MA
J Bacteriol; 2009 Jan; 191(1):91-9. PubMed ID: 18978054
[TBL] [Abstract][Full Text] [Related]
19.
Wu Y; Lau HK; Lee T; Lau DK; Payne J
Appl Environ Microbiol; 2019 Apr; 85(7):. PubMed ID: 30709819
[TBL] [Abstract][Full Text] [Related]
20. Novel multiplex PCR assay for identification and subtyping of enteroinvasive Escherichia coli and differentiation from Shigella based on target genes selected by comparative genomics.
Dhakal R; Wang Q; Lan R; Howard P; Sintchenko V
J Med Microbiol; 2018 Sep; 67(9):1257-1264. PubMed ID: 29969087
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]