232 related articles for article (PubMed ID: 33961223)
41. FANTOM: Functional and taxonomic analysis of metagenomes.
Sanli K; Karlsson FH; Nookaew I; Nielsen J
BMC Bioinformatics; 2013 Feb; 14():38. PubMed ID: 23375020
[TBL] [Abstract][Full Text] [Related]
42. Normalization of Microbiome Profiling Data.
McMurdie PJ
Methods Mol Biol; 2018; 1849():143-168. PubMed ID: 30298253
[TBL] [Abstract][Full Text] [Related]
43. Exploiting topic modeling to boost metagenomic reads binning.
Zhang R; Cheng Z; Guan J; Zhou S
BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
[TBL] [Abstract][Full Text] [Related]
44. Gene calling and bacterial genome annotation with BG7.
Tobes R; Pareja-Tobes P; Manrique M; Pareja-Tobes E; Kovach E; Alekhin A; Pareja E
Methods Mol Biol; 2015; 1231():177-89. PubMed ID: 25343866
[TBL] [Abstract][Full Text] [Related]
45. An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography.
Nayfach S; Rodriguez-Mueller B; Garud N; Pollard KS
Genome Res; 2016 Nov; 26(11):1612-1625. PubMed ID: 27803195
[TBL] [Abstract][Full Text] [Related]
46. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
Bose T; Haque MM; Reddy C; Mande SS
PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344
[TBL] [Abstract][Full Text] [Related]
47. RAIphy: phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles.
Nalbantoglu OU; Way SF; Hinrichs SH; Sayood K
BMC Bioinformatics; 2011 Jan; 12():41. PubMed ID: 21281493
[TBL] [Abstract][Full Text] [Related]
48. Deep learning models for bacteria taxonomic classification of metagenomic data.
Fiannaca A; La Paglia L; La Rosa M; Lo Bosco G; Renda G; Rizzo R; Gaglio S; Urso A
BMC Bioinformatics; 2018 Jul; 19(Suppl 7):198. PubMed ID: 30066629
[TBL] [Abstract][Full Text] [Related]
49. Binning unassembled short reads based on k-mer abundance covariance using sparse coding.
Kyrgyzov O; Prost V; Gazut S; Farcy B; Brüls T
Gigascience; 2020 Apr; 9(4):. PubMed ID: 32219339
[TBL] [Abstract][Full Text] [Related]
50. Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum.
McLean JS; Lombardo MJ; Badger JH; Edlund A; Novotny M; Yee-Greenbaum J; Vyahhi N; Hall AP; Yang Y; Dupont CL; Ziegler MG; Chitsaz H; Allen AE; Yooseph S; Tesler G; Pevzner PA; Friedman RM; Nealson KH; Venter JC; Lasken RS
Proc Natl Acad Sci U S A; 2013 Jun; 110(26):E2390-9. PubMed ID: 23754396
[TBL] [Abstract][Full Text] [Related]
51. Recovering microbial genomes from metagenomes in hypersaline environments: The Good, the Bad and the Ugly.
Ramos-Barbero MD; Martin-Cuadrado AB; Viver T; Santos F; Martinez-Garcia M; Antón J
Syst Appl Microbiol; 2019 Jan; 42(1):30-40. PubMed ID: 30528276
[TBL] [Abstract][Full Text] [Related]
52. A review of methods and databases for metagenomic classification and assembly.
Breitwieser FP; Lu J; Salzberg SL
Brief Bioinform; 2019 Jul; 20(4):1125-1136. PubMed ID: 29028872
[TBL] [Abstract][Full Text] [Related]
53. Bacterial Genomic Data Analysis in the Next-Generation Sequencing Era.
Orsini M; Cuccuru G; Uva P; Fotia G
Methods Mol Biol; 2016; 1415():407-22. PubMed ID: 27115645
[TBL] [Abstract][Full Text] [Related]
54. MetaMicrobesOnline: phylogenomic analysis of microbial communities.
Chivian D; Dehal PS; Keller K; Arkin AP
Nucleic Acids Res; 2013 Jan; 41(Database issue):D648-54. PubMed ID: 23203984
[TBL] [Abstract][Full Text] [Related]
55. Quality control of microbiota metagenomics by k-mer analysis.
Plaza Onate F; Batto JM; Juste C; Fadlallah J; Fougeroux C; Gouas D; Pons N; Kennedy S; Levenez F; Dore J; Ehrlich SD; Gorochov G; Larsen M
BMC Genomics; 2015 Mar; 16(1):183. PubMed ID: 25887914
[TBL] [Abstract][Full Text] [Related]
56. Taxonomic binning of metagenome samples generated by next-generation sequencing technologies.
Dröge J; McHardy AC
Brief Bioinform; 2012 Nov; 13(6):646-55. PubMed ID: 22851513
[TBL] [Abstract][Full Text] [Related]
57. Metaphor-A workflow for streamlined assembly and binning of metagenomes.
Salazar VW; Shaban B; Quiroga MDM; Turnbull R; Tescari E; Rossetto Marcelino V; Verbruggen H; Lê Cao KA
Gigascience; 2022 Dec; 12():. PubMed ID: 37522759
[TBL] [Abstract][Full Text] [Related]
58. MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies.
Norling M; Karlsson-Lindsjö OE; Gourlé H; Bongcam-Rudloff E; Hayer J
PLoS One; 2016; 11(8):e0160334. PubMed ID: 27479078
[TBL] [Abstract][Full Text] [Related]
59. CLAME: a new alignment-based binning algorithm allows the genomic description of a novel Xanthomonadaceae from the Colombian Andes.
Benavides A; Isaza JP; Niño-García JP; Alzate JF; Cabarcas F
BMC Genomics; 2018 Dec; 19(Suppl 8):858. PubMed ID: 30537931
[TBL] [Abstract][Full Text] [Related]
60. Defining orthologs and pangenome size metrics.
Bosi E; Fani R; Fondi M
Methods Mol Biol; 2015; 1231():191-202. PubMed ID: 25343867
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
