243 related articles for article (PubMed ID: 33961226)
1. Phylogenetic Methods for Genome-Wide Association Studies in Bacteria.
Didelot X
Methods Mol Biol; 2021; 2242():205-220. PubMed ID: 33961226
[TBL] [Abstract][Full Text] [Related]
2. Inferring Core Genome Phylogenies for Bacteria.
Keller A; Ankenbrand MJ
Methods Mol Biol; 2021; 2242():59-68. PubMed ID: 33961217
[TBL] [Abstract][Full Text] [Related]
3. Inferring Phylogenomic Relationship of Microbes Using Scalable Alignment-Free Methods.
Bernard G; Stephens TG; González-Pech RA; Chan CX
Methods Mol Biol; 2021; 2242():69-76. PubMed ID: 33961218
[TBL] [Abstract][Full Text] [Related]
4. Advances in Understanding Bacterial Pathogenesis Gained from Whole-Genome Sequencing and Phylogenetics.
Klemm E; Dougan G
Cell Host Microbe; 2016 May; 19(5):599-610. PubMed ID: 27173928
[TBL] [Abstract][Full Text] [Related]
5. Reconstructing the Ancestral Relationships Between Bacterial Pathogen Genomes.
Collins C; Didelot X
Methods Mol Biol; 2017; 1535():109-137. PubMed ID: 27914076
[TBL] [Abstract][Full Text] [Related]
6. Bacterial phylogenetic reconstruction from whole genomes is robust to recombination but demographic inference is not.
Hedge J; Wilson DJ
mBio; 2014 Nov; 5(6):e02158. PubMed ID: 25425237
[TBL] [Abstract][Full Text] [Related]
7. Genome Recovery, Functional Profiling, and Taxonomic Classification from Metagenomes.
Albanese D; Donati C
Methods Mol Biol; 2021; 2242():153-172. PubMed ID: 33961223
[TBL] [Abstract][Full Text] [Related]
8. SimBac: simulation of whole bacterial genomes with homologous recombination.
Brown T; Didelot X; Wilson DJ; Maio N
Microb Genom; 2016 Jan; 2(1):. PubMed ID: 27713837
[TBL] [Abstract][Full Text] [Related]
9. Comparative genomics reveals broad genetic diversity, extensive recombination and nascent ecological adaptation in Micrococcus luteus.
Li Y; Sun ZZ; Rong JC; Xie BB
BMC Genomics; 2021 Feb; 22(1):124. PubMed ID: 33602135
[TBL] [Abstract][Full Text] [Related]
10. A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life.
Parks DH; Chuvochina M; Waite DW; Rinke C; Skarshewski A; Chaumeil PA; Hugenholtz P
Nat Biotechnol; 2018 Nov; 36(10):996-1004. PubMed ID: 30148503
[TBL] [Abstract][Full Text] [Related]
11. Fast Phylogeny Reconstruction from Genomes of Closely Related Microbes.
Haubold B; Klötzl F
Methods Mol Biol; 2021; 2242():77-89. PubMed ID: 33961219
[TBL] [Abstract][Full Text] [Related]
12. Toward the use of genomics to study microevolutionary change in bacteria.
Falush D
PLoS Genet; 2009 Oct; 5(10):e1000627. PubMed ID: 19855823
[TBL] [Abstract][Full Text] [Related]
13. Genomic metrics made easy: what to do and where to go in the new era of bacterial taxonomy.
Hayashi Sant'Anna F; Bach E; Porto RZ; Guella F; Hayashi Sant'Anna E; Passaglia LMP
Crit Rev Microbiol; 2019 Mar; 45(2):182-200. PubMed ID: 31148498
[TBL] [Abstract][Full Text] [Related]
14. Functional Metagenomics for Identification of Antibiotic Resistance Genes (ARGs).
Di Cesare F
Methods Mol Biol; 2021; 2242():173-183. PubMed ID: 33961224
[TBL] [Abstract][Full Text] [Related]
15. ClonalFrameML: efficient inference of recombination in whole bacterial genomes.
Didelot X; Wilson DJ
PLoS Comput Biol; 2015 Feb; 11(2):e1004041. PubMed ID: 25675341
[TBL] [Abstract][Full Text] [Related]
16. Genomics and the bacterial species problem.
Doolittle WF; Papke RT
Genome Biol; 2006; 7(9):116. PubMed ID: 17020593
[TBL] [Abstract][Full Text] [Related]
17. Bayesian inference of ancestral dates on bacterial phylogenetic trees.
Didelot X; Croucher NJ; Bentley SD; Harris SR; Wilson DJ
Nucleic Acids Res; 2018 Dec; 46(22):e134. PubMed ID: 30184106
[TBL] [Abstract][Full Text] [Related]
18. Genome evolution in bacterial endosymbionts of insects.
Wernegreen JJ
Nat Rev Genet; 2002 Nov; 3(11):850-61. PubMed ID: 12415315
[TBL] [Abstract][Full Text] [Related]
19. A relative-entropy algorithm for genomic fingerprinting captures host-phage similarities.
Robins H; Krasnitz M; Barak H; Levine AJ
J Bacteriol; 2005 Dec; 187(24):8370-4. PubMed ID: 16321941
[TBL] [Abstract][Full Text] [Related]
20. A Guide to Phylogenomic Inference.
Patané JSL; Martins J; Setubal JC
Methods Mol Biol; 2024; 2802():267-345. PubMed ID: 38819564
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
