181 related articles for article (PubMed ID: 33970219)
1. NeoFox: annotating neoantigen candidates with neoantigen features.
Lang F; Riesgo-Ferreiro P; Löwer M; Sahin U; Schrörs B
Bioinformatics; 2021 Nov; 37(22):4246-4247. PubMed ID: 33970219
[TBL] [Abstract][Full Text] [Related]
2. INTEGRATE-neo: a pipeline for personalized gene fusion neoantigen discovery.
Zhang J; Mardis ER; Maher CA
Bioinformatics; 2017 Feb; 33(4):555-557. PubMed ID: 27797777
[TBL] [Abstract][Full Text] [Related]
3. synergy: a Python library for calculating, analyzing and visualizing drug combination synergy.
Wooten DJ; Albert R
Bioinformatics; 2021 Jun; 37(10):1473-1474. PubMed ID: 32960970
[TBL] [Abstract][Full Text] [Related]
4. CharGer: clinical Characterization of Germline variants.
Scott AD; Huang KL; Weerasinghe A; Mashl RJ; Gao Q; Martins Rodrigues F; Wyczalkowski MA; Ding L
Bioinformatics; 2019 Mar; 35(5):865-867. PubMed ID: 30102335
[TBL] [Abstract][Full Text] [Related]
5. Analysing high-throughput sequencing data in Python with HTSeq 2.0.
Putri GH; Anders S; Pyl PT; Pimanda JE; Zanini F
Bioinformatics; 2022 May; 38(10):2943-2945. PubMed ID: 35561197
[TBL] [Abstract][Full Text] [Related]
6. DNA Features Viewer: a sequence annotation formatting and plotting library for Python.
Zulkower V; Rosser S
Bioinformatics; 2020 Aug; 36(15):4350-4352. PubMed ID: 32637988
[TBL] [Abstract][Full Text] [Related]
7. nextNEOpi: a comprehensive pipeline for computational neoantigen prediction.
Rieder D; Fotakis G; Ausserhofer M; René G; Paster W; Trajanoski Z; Finotello F
Bioinformatics; 2022 Jan; 38(4):1131-1132. PubMed ID: 34788790
[TBL] [Abstract][Full Text] [Related]
8. scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data.
Faure L; Soldatov R; Kharchenko PV; Adameyko I
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36394263
[TBL] [Abstract][Full Text] [Related]
9. Correction to: NeoFox: annotating neoantigen candidates with neoantigen features.
Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 38140710
[No Abstract] [Full Text] [Related]
10. ScanNeo2: a comprehensive workflow for neoantigen detection and immunogenicity prediction from diverse genomic and transcriptomic alterations.
Schäfer RA; Guo Q; Yang R
Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37882750
[TBL] [Abstract][Full Text] [Related]
11. Knot_pull-python package for biopolymer smoothing and knot detection.
Jarmolinska AI; Gambin A; Sulkowska JI
Bioinformatics; 2020 Feb; 36(3):953-955. PubMed ID: 31504154
[TBL] [Abstract][Full Text] [Related]
12. A Python package for parsing, validating, mapping and formatting sequence variants using HGVS nomenclature.
Hart RK; Rico R; Hare E; Garcia J; Westbrook J; Fusaro VA
Bioinformatics; 2015 Jan; 31(2):268-70. PubMed ID: 25273102
[TBL] [Abstract][Full Text] [Related]
13. CapiPy: python-based GUI-application to assist in protein immobilization.
Roura Padrosa D; Marchini V; Paradisi F
Bioinformatics; 2021 Sep; 37(17):2761-2762. PubMed ID: 33459767
[TBL] [Abstract][Full Text] [Related]
14. Seq2Neo: A Comprehensive Pipeline for Cancer Neoantigen Immunogenicity Prediction.
Diao K; Chen J; Wu T; Wang X; Wang G; Sun X; Zhao X; Wu C; Wang J; Yao H; Gerarduzzi C; Liu XS
Int J Mol Sci; 2022 Oct; 23(19):. PubMed ID: 36232923
[TBL] [Abstract][Full Text] [Related]
15. PDEparams: parameter fitting toolbox for partial differential equations in python.
Parra-Rojas C; Hernandez-Vargas EA
Bioinformatics; 2020 Apr; 36(8):2618-2619. PubMed ID: 31851311
[TBL] [Abstract][Full Text] [Related]
16. Prediction of tumor-specific splicing from somatic mutations as a source of neoantigen candidates.
Lang F; Sorn P; Suchan M; Henrich A; Albrecht C; Köhl N; Beicht A; Riesgo-Ferreiro P; Holtsträter C; Schrörs B; Weber D; Löwer M; Sahin U; Ibn-Salem J
Bioinform Adv; 2024; 4(1):vbae080. PubMed ID: 38863673
[TBL] [Abstract][Full Text] [Related]
17. AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge.
Voytik E; Bludau I; Willems S; Hansen FM; Brunner AD; Strauss MT; Mann M
Bioinformatics; 2022 Jan; 38(3):849-852. PubMed ID: 34586352
[TBL] [Abstract][Full Text] [Related]
18. PathBuilder--open source software for annotating and developing pathway resources.
Kandasamy K; Keerthikumar S; Raju R; Keshava Prasad TS; Ramachandra YL; Mohan S; Pandey A
Bioinformatics; 2009 Nov; 25(21):2860-2. PubMed ID: 19628504
[TBL] [Abstract][Full Text] [Related]
19. MACA: marker-based automatic cell-type annotation for single-cell expression data.
Xu Y; Baumgart SJ; Stegmann CM; Hayat S
Bioinformatics; 2022 Mar; 38(6):1756-1760. PubMed ID: 34935911
[TBL] [Abstract][Full Text] [Related]
20. ScanNeo: identifying indel-derived neoantigens using RNA-Seq data.
Wang TY; Wang L; Alam SK; Hoeppner LH; Yang R
Bioinformatics; 2019 Oct; 35(20):4159-4161. PubMed ID: 30887025
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
