These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

243 related articles for article (PubMed ID: 33978738)

  • 1. Modernized uniform representation of carbohydrate molecules in the Protein Data Bank.
    Shao C; Feng Z; Westbrook JD; Peisach E; Berrisford J; Ikegawa Y; Kurisu G; Velankar S; Burley SK; Young JY
    Glycobiology; 2021 Sep; 31(9):1204-1218. PubMed ID: 33978738
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The Protein Data Bank Archive.
    Velankar S; Burley SK; Kurisu G; Hoch JC; Markley JL
    Methods Mol Biol; 2021; 2305():3-21. PubMed ID: 33950382
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank.
    Feng Z; Westbrook JD; Sala R; Smart OS; Bricogne G; Matsubara M; Yamada I; Tsuchiya S; Aoki-Kinoshita KF; Hoch JC; Kurisu G; Velankar S; Burley SK; Young JY
    Structure; 2021 Apr; 29(4):393-400.e1. PubMed ID: 33657417
    [TBL] [Abstract][Full Text] [Related]  

  • 4. pdb-care (PDB carbohydrate residue check): a program to support annotation of complex carbohydrate structures in PDB files.
    Lütteke T; von der Lieth CW
    BMC Bioinformatics; 2004 Jun; 5():69. PubMed ID: 15180909
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Data mining the protein data bank: automatic detection and assignment of carbohydrate structures.
    Lütteke T; Frank M; von der Lieth CW
    Carbohydr Res; 2004 Apr; 339(5):1015-20. PubMed ID: 15010309
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Analysis and validation of carbohydrate three-dimensional structures.
    Lütteke T
    Acta Crystallogr D Biol Crystallogr; 2009 Feb; 65(Pt 2):156-68. PubMed ID: 19171971
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PDB explorer -- a web based algorithm for protein annotation viewer and 3D visualization.
    Nayarisseri A; Shardiwal RK; Yadav M; Kanungo N; Singh P; Shah P; Ahmed S
    Interdiscip Sci; 2014 Dec; 6(4):279-84. PubMed ID: 25118648
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format.
    Kinjo AR; Suzuki H; Yamashita R; Ikegawa Y; Kudou T; Igarashi R; Kengaku Y; Cho H; Standley DM; Nakagawa A; Nakamura H
    Nucleic Acids Res; 2012 Jan; 40(Database issue):D453-60. PubMed ID: 21976737
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education.
    Burley SK; Berman HM; Christie C; Duarte JM; Feng Z; Westbrook J; Young J; Zardecki C
    Protein Sci; 2018 Jan; 27(1):316-330. PubMed ID: 29067736
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Small molecule annotation for the Protein Data Bank.
    Sen S; Young J; Berrisford JM; Chen M; Conroy MJ; Dutta S; Di Costanzo L; Gao G; Ghosh S; Hudson BP; Igarashi R; Kengaku Y; Liang Y; Peisach E; Persikova I; Mukhopadhyay A; Narayanan BC; Sahni G; Sato J; Sekharan M; Shao C; Tan L; Zhuravleva MA
    Database (Oxford); 2014; 2014():bau116. PubMed ID: 25425036
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D.
    Burley SK; Bhikadiya C; Bi C; Bittrich S; Chen L; Crichlow GV; Duarte JM; Dutta S; Fayazi M; Feng Z; Flatt JW; Ganesan SJ; Goodsell DS; Ghosh S; Kramer Green R; Guranovic V; Henry J; Hudson BP; Lawson CL; Liang Y; Lowe R; Peisach E; Persikova I; Piehl DW; Rose Y; Sali A; Segura J; Sekharan M; Shao C; Vallat B; Voigt M; Westbrook JD; Whetstone S; Young JY; Zardecki C
    Protein Sci; 2022 Jan; 31(1):187-208. PubMed ID: 34676613
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students.
    Burley SK; Berman HM; Duarte JM; Feng Z; Flatt JW; Hudson BP; Lowe R; Peisach E; Piehl DW; Rose Y; Sali A; Sekharan M; Shao C; Vallat B; Voigt M; Westbrook JD; Young JY; Zardecki C
    Biomolecules; 2022 Oct; 12(10):. PubMed ID: 36291635
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Protein Data Bank: the single global archive for 3D macromolecular structure data.
    wwPDB consortium
    Nucleic Acids Res; 2019 Jan; 47(D1):D520-D528. PubMed ID: 30357364
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Current Status of Carbohydrates Information in the Protein Data Bank.
    de Meirelles JL; Nepomuceno FC; Peña-García J; Schmidt RR; Pérez-Sánchez H; Verli H
    J Chem Inf Model; 2020 Feb; 60(2):684-699. PubMed ID: 31961683
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Data mining the PDB for glyco-related data.
    Lütteke T; von der Lieth CW
    Methods Mol Biol; 2009; 534():293-310. PubMed ID: 19277543
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank.
    Park SJ; Lee J; Patel DS; Ma H; Lee HS; Jo S; Im W
    Bioinformatics; 2017 Oct; 33(19):3051-3057. PubMed ID: 28582506
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances.
    Bittrich S; Bhikadiya C; Bi C; Chao H; Duarte JM; Dutta S; Fayazi M; Henry J; Khokhriakov I; Lowe R; Piehl DW; Segura J; Vallat B; Voigt M; Westbrook JD; Burley SK; Rose Y
    J Mol Biol; 2023 Jul; 435(14):167994. PubMed ID: 36738985
    [TBL] [Abstract][Full Text] [Related]  

  • 18. IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods.
    Vallat B; Webb BM; Westbrook JD; Goddard TD; Hanke CA; Graziadei A; Peisach E; Zalevsky A; Sagendorf J; Tangmunarunkit H; Voinea S; Sekharan M; Yu J; Bonvin AAMJJ; DiMaio F; Hummer G; Meiler J; Tajkhorshid E; Ferrin TE; Lawson CL; Leitner A; Rappsilber J; Seidel CAM; Jeffries CM; Burley SK; Hoch JC; Kurisu G; Morris K; Patwardhan A; Velankar S; Schwede T; Trewhella J; Kesselman C; Berman HM; Sali A
    J Mol Biol; 2024 Mar; ():168546. PubMed ID: 38508301
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PDBe: improved findability of macromolecular structure data in the PDB.
    Armstrong DR; Berrisford JM; Conroy MJ; Gutmanas A; Anyango S; Choudhary P; Clark AR; Dana JM; Deshpande M; Dunlop R; Gane P; Gáborová R; Gupta D; Haslam P; Koča J; Mak L; Mir S; Mukhopadhyay A; Nadzirin N; Nair S; Paysan-Lafosse T; Pravda L; Sehnal D; Salih O; Smart O; Tolchard J; Varadi M; Svobodova-Vařeková R; Zaki H; Kleywegt GJ; Velankar S
    Nucleic Acids Res; 2020 Jan; 48(D1):D335-D343. PubMed ID: 31691821
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A systematic analysis of protein-carbohydrate interactions in the Protein Data Bank.
    Cao Y; Park SJ; Im W
    Glycobiology; 2021 Feb; 31(2):126-136. PubMed ID: 32614943
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.