These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

160 related articles for article (PubMed ID: 33990600)

  • 1. Tissue context determines the penetrance of regulatory DNA variation.
    Halow JM; Byron R; Hogan MS; Ordoñez R; Groudine M; Bender MA; Stamatoyannopoulos JA; Maurano MT
    Nat Commun; 2021 May; 12(1):2850. PubMed ID: 33990600
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Effects of sequence variation on differential allelic transcription factor occupancy and gene expression.
    Reddy TE; Gertz J; Pauli F; Kucera KS; Varley KE; Newberry KM; Marinov GK; Mortazavi A; Williams BA; Song L; Crawford GE; Wold B; Willard HF; Myers RM
    Genome Res; 2012 May; 22(5):860-9. PubMed ID: 22300769
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Global reference mapping of human transcription factor footprints.
    Vierstra J; Lazar J; Sandstrom R; Halow J; Lee K; Bates D; Diegel M; Dunn D; Neri F; Haugen E; Rynes E; Reynolds A; Nelson J; Johnson A; Frerker M; Buckley M; Kaul R; Meuleman W; Stamatoyannopoulos JA
    Nature; 2020 Jul; 583(7818):729-736. PubMed ID: 32728250
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Selected heterozygosity at cis-regulatory sequences increases the expression homogeneity of a cell population in humans.
    Sung MK; Jang J; Lee KS; Ghim CM; Choi JK
    Genome Biol; 2016 Jul; 17(1):164. PubMed ID: 27468897
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Genetic regulatory signatures underlying islet gene expression and type 2 diabetes.
    Varshney A; Scott LJ; Welch RP; Erdos MR; Chines PS; Narisu N; Albanus RD; Orchard P; Wolford BN; Kursawe R; Vadlamudi S; Cannon ME; Didion JP; Hensley J; Kirilusha A; ; Bonnycastle LL; Taylor DL; Watanabe R; Mohlke KL; Boehnke M; Collins FS; Parker SC; Stitzel ML
    Proc Natl Acad Sci U S A; 2017 Feb; 114(9):2301-2306. PubMed ID: 28193859
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Predicting transcription factor site occupancy using DNA sequence intrinsic and cell-type specific chromatin features.
    Kumar S; Bucher P
    BMC Bioinformatics; 2016 Jan; 17 Suppl 1(Suppl 1):4. PubMed ID: 26818008
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo.
    Maurano MT; Haugen E; Sandstrom R; Vierstra J; Shafer A; Kaul R; Stamatoyannopoulos JA
    Nat Genet; 2015 Dec; 47(12):1393-401. PubMed ID: 26502339
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations.
    GuhaThakurta D; Xie T; Anand M; Edwards SW; Li G; Wang SS; Schadt EE
    BMC Genomics; 2006 Sep; 7():235. PubMed ID: 16978413
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription.
    Kilpinen H; Waszak SM; Gschwind AR; Raghav SK; Witwicki RM; Orioli A; Migliavacca E; Wiederkehr M; Gutierrez-Arcelus M; Panousis NI; Yurovsky A; Lappalainen T; Romano-Palumbo L; Planchon A; Bielser D; Bryois J; Padioleau I; Udin G; Thurnheer S; Hacker D; Core LJ; Lis JT; Hernandez N; Reymond A; Deplancke B; Dermitzakis ET
    Science; 2013 Nov; 342(6159):744-7. PubMed ID: 24136355
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Population Variation and Genetic Control of Modular Chromatin Architecture in Humans.
    Waszak SM; Delaneau O; Gschwind AR; Kilpinen H; Raghav SK; Witwicki RM; Orioli A; Wiederkehr M; Panousis NI; Yurovsky A; Romano-Palumbo L; Planchon A; Bielser D; Padioleau I; Udin G; Thurnheer S; Hacker D; Hernandez N; Reymond A; Deplancke B; Dermitzakis ET
    Cell; 2015 Aug; 162(5):1039-50. PubMed ID: 26300124
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Single-cell chromatin accessibility reveals principles of regulatory variation.
    Buenrostro JD; Wu B; Litzenburger UM; Ruff D; Gonzales ML; Snyder MP; Chang HY; Greenleaf WJ
    Nature; 2015 Jul; 523(7561):486-90. PubMed ID: 26083756
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Principles of regulatory information conservation between mouse and human.
    Cheng Y; Ma Z; Kim BH; Wu W; Cayting P; Boyle AP; Sundaram V; Xing X; Dogan N; Li J; Euskirchen G; Lin S; Lin Y; Visel A; Kawli T; Yang X; Patacsil D; Keller CA; Giardine B; ; Kundaje A; Wang T; Pennacchio LA; Weng Z; Hardison RC; Snyder MP
    Nature; 2014 Nov; 515(7527):371-375. PubMed ID: 25409826
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Mapping cis-acting regulatory variation in recombinant congenic strains.
    Lee PD; Ge B; Greenwood CM; Sinnett D; Fortin Y; Brunet S; Fortin A; Takane M; Skamene E; Pastinen T; Hallett M; Hudson TJ; Sladek R
    Physiol Genomics; 2006 Apr; 25(2):294-302. PubMed ID: 16449383
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DeFine: deep convolutional neural networks accurately quantify intensities of transcription factor-DNA binding and facilitate evaluation of functional non-coding variants.
    Wang M; Tai C; E W; Wei L
    Nucleic Acids Res; 2018 Jun; 46(11):e69. PubMed ID: 29617928
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Genetic variation is a key determinant of chromatin accessibility and drives differences in the regulatory landscape of C57BL/6J and 129S1/SvImJ mice.
    Mononen J; Taipale M; Malinen M; Velidendla B; Niskanen E; Levonen AL; Ruotsalainen AK; Heikkinen S
    Nucleic Acids Res; 2024 Apr; 52(6):2904-2923. PubMed ID: 38153160
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Exploiting genetic variation to uncover rules of transcription factor binding and chromatin accessibility.
    Behera V; Evans P; Face CJ; Hamagami N; Sankaranarayanan L; Keller CA; Giardine B; Tan K; Hardison RC; Shi J; Blobel GA
    Nat Commun; 2018 Feb; 9(1):782. PubMed ID: 29472540
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Hybrid mice reveal parent-of-origin and Cis- and trans-regulatory effects in the retina.
    Shen SQ; Turro E; Corbo JC
    PLoS One; 2014; 9(10):e109382. PubMed ID: 25340786
    [TBL] [Abstract][Full Text] [Related]  

  • 18.
    Cannon ME; Duan Q; Wu Y; Zeynalzadeh M; Xu Z; Kangas AJ; Soininen P; Ala-Korpela M; Civelek M; Lusis AJ; Kuusisto J; Collins FS; Boehnke M; Tang H; Laakso M; Li Y; Mohlke KL
    G3 (Bethesda); 2017 Sep; 7(9):3217-3227. PubMed ID: 28754724
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Competition between DNA methylation and transcription factors determines binding of NRF1.
    Domcke S; Bardet AF; Adrian Ginno P; Hartl D; Burger L; Schübeler D
    Nature; 2015 Dec; 528(7583):575-9. PubMed ID: 26675734
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Fine-mapping
    Tehranchi A; Hie B; Dacre M; Kaplow I; Pettie K; Combs P; Fraser HB
    Elife; 2019 Jan; 8():. PubMed ID: 30650056
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.