BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

135 related articles for article (PubMed ID: 34006333)

  • 1. Optimizing Nanopore sequencing-based detection of structural variants enables individualized circulating tumor DNA-based disease monitoring in cancer patients.
    Valle-Inclan JE; Stangl C; de Jong AC; van Dessel LF; van Roosmalen MJ; Helmijr JCA; Renkens I; Janssen R; de Blank S; de Witte CJ; Martens JWM; Jansen MPHM; Lolkema MP; Kloosterman WP
    Genome Med; 2021 May; 13(1):86. PubMed ID: 34006333
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Detection of circulating tumor DNA (ctDNA) by digital droplet polymerase chain reaction (dd-PCR) in liquid biopsies.
    Valpione S; Campana L
    Methods Enzymol; 2019; 629():1-15. PubMed ID: 31727235
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PACT: a pipeline for analysis of circulating tumor DNA.
    Webster J; Dang HX; Chauhan PS; Feng W; Shiang A; Harris PK; Pachynski RK; Chaudhuri AA; Maher CA
    Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37549060
    [TBL] [Abstract][Full Text] [Related]  

  • 4. NanoVar: accurate characterization of patients' genomic structural variants using low-depth nanopore sequencing.
    Tham CY; Tirado-Magallanes R; Goh Y; Fullwood MJ; Koh BTH; Wang W; Ng CH; Chng WJ; Thiery A; Tenen DG; Benoukraf T
    Genome Biol; 2020 Mar; 21(1):56. PubMed ID: 32127024
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Benchmarking long-read aligners and SV callers for structural variation detection in Oxford nanopore sequencing data.
    Helal AA; Saad BT; Saad MT; Mosaad GS; Aboshanab KM
    Sci Rep; 2024 Mar; 14(1):6160. PubMed ID: 38486064
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Liquid biopsy: unlocking the potentials of cell-free DNA.
    Chu D; Park BH
    Virchows Arch; 2017 Aug; 471(2):147-154. PubMed ID: 28466157
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Evaluation of Germline Structural Variant Calling Methods for Nanopore Sequencing Data.
    Bolognini D; Magi A
    Front Genet; 2021; 12():761791. PubMed ID: 34868242
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Detection of Circulating Tumor DNA with a Single-Molecule Sequencing Analysis Validated for Targeted and Immunotherapy Selection.
    Atkins A; Gupta P; Zhang BM; Tsai WS; Lucas J; Javey M; Vora A; Mei R
    Mol Diagn Ther; 2019 Aug; 23(4):521-535. PubMed ID: 31209714
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Analytical validation of a novel comprehensive genomic profiling informed circulating tumor DNA monitoring assay for solid tumors.
    Zollinger DR; Rivers E; Fine A; Huang Y; Son J; Kalyan A; Gray W; Baharian G; Hammond C; Ram R; Ringman L; Hafez D; Savel D; Patel V; Dantone M; Guo C; Childress M; Xu C; Johng D; Wallden B; Pokharel P; Camara W; Hegde PS; Hughes J; Carter C; Davarpanah N; Degaonkar V; Gupta P; Mariathasan S; Powles T; Ferree S; Dennis L; Young A
    PLoS One; 2024; 19(5):e0302129. PubMed ID: 38753705
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Microarray Approach Combined with ddPCR: An Useful Pipeline for the Detection and Quantification of Circulating Tumour dna Mutations.
    Galbiati S; Damin F; Ferraro L; Soriani N; Burgio V; Ronzoni M; Gianni L; Ferrari M; Chiari M
    Cells; 2019 Jul; 8(8):. PubMed ID: 31344983
    [No Abstract]   [Full Text] [Related]  

  • 11. Structural variation and fusion detection using targeted sequencing data from circulating cell free DNA.
    Gawroński AR; Lin YY; McConeghy B; LeBihan S; Asghari H; Koçkan C; Orabi B; Adra N; Pili R; Collins CC; Sahinalp SC; Hach F
    Nucleic Acids Res; 2019 Apr; 47(7):e38. PubMed ID: 30759232
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A recurrence-based approach for validating structural variation using long-read sequencing technology.
    Zhao X; Weber AM; Mills RE
    Gigascience; 2017 Aug; 6(8):1-9. PubMed ID: 28873962
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Multiplex detection of ctDNA mutations in plasma of colorectal cancer patients by PCR/SERS assay.
    Lyu N; Rajendran VK; Diefenbach RJ; Charles K; Clarke SJ; Engel A; ; Rizos H; Molloy MP; Wang Y
    Nanotheranostics; 2020; 4(4):224-232. PubMed ID: 32923312
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Aperture: alignment-free detection of structural variations and viral integrations in circulating tumor DNA.
    Liu H; Yin H; Li G; Li J; Wang X
    Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34368852
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data.
    Gu W; Zhou A; Wang L; Sun S; Cui X; Zhu D
    J Comput Biol; 2021 Aug; 28(8):774-788. PubMed ID: 33973820
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Circulating tumor DNA (ctDNA) is not a good proxy for liquid biopsies of tumor tissues for early detection.
    Fiala C; Diamandis EP
    Clin Chem Lab Med; 2020 Sep; 58(10):1651-1653. PubMed ID: 32160156
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Identification of Structural Variation in Chimpanzees Using Optical Mapping and Nanopore Sequencing.
    Soto DC; Shew C; Mastoras M; Schmidt JM; Sahasrabudhe R; Kaya G; Andrés AM; Dennis MY
    Genes (Basel); 2020 Mar; 11(3):. PubMed ID: 32143403
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Enrichment and Analysis of ctDNA.
    Gilson P
    Recent Results Cancer Res; 2020; 215():181-211. PubMed ID: 31605230
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Integrative statistical analyses of multiple liquid biopsy analytes in metastatic breast cancer.
    Keup C; Suryaprakash V; Hauch S; Storbeck M; Hahn P; Sprenger-Haussels M; Kolberg HC; Tewes M; Hoffmann O; Kimmig R; Kasimir-Bauer S
    Genome Med; 2021 May; 13(1):85. PubMed ID: 34001236
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Picky comprehensively detects high-resolution structural variants in nanopore long reads.
    Gong L; Wong CH; Cheng WC; Tjong H; Menghi F; Ngan CY; Liu ET; Wei CL
    Nat Methods; 2018 Jun; 15(6):455-460. PubMed ID: 29713081
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.