255 related articles for article (PubMed ID: 34011275)
1. Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets.
Porter TM; Hajibabaei M
BMC Bioinformatics; 2021 May; 22(1):256. PubMed ID: 34011275
[TBL] [Abstract][Full Text] [Related]
2. Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified.
Song H; Buhay JE; Whiting MF; Crandall KA
Proc Natl Acad Sci U S A; 2008 Sep; 105(36):13486-91. PubMed ID: 18757756
[TBL] [Abstract][Full Text] [Related]
3. Do pseudogenes pose a problem for metabarcoding marine animal communities?
Schultz JA; Hebert PDN
Mol Ecol Resour; 2022 Nov; 22(8):2897-2914. PubMed ID: 35700118
[TBL] [Abstract][Full Text] [Related]
4. Validated removal of nuclear pseudogenes and sequencing artefacts from mitochondrial metabarcode data.
Andújar C; Creedy TJ; Arribas P; López H; Salces-Castellano A; Pérez-Delgado AJ; Vogler AP; Emerson BC
Mol Ecol Resour; 2021 Aug; 21(6):1772-1787. PubMed ID: 33503286
[TBL] [Abstract][Full Text] [Related]
5. Mitochondrial pseudogenes in the nuclear genome of Aedes aegypti mosquitoes: implications for past and future population genetic studies.
Hlaing T; Tun-Lin W; Somboon P; Socheat D; Setha T; Min S; Chang MS; Walton C
BMC Genet; 2009 Mar; 10():11. PubMed ID: 19267896
[TBL] [Abstract][Full Text] [Related]
6. Numts: an impediment to DNA barcoding of Polyclinids, Tunicata.
Ahmed NS; Jaffar Ali HA
Mitochondrial DNA A DNA Mapp Seq Anal; 2016 Sep; 27(5):3395-8. PubMed ID: 25815560
[TBL] [Abstract][Full Text] [Related]
7. Implications of hybridization, NUMTs, and overlooked diversity for DNA Barcoding of Eurasian ground squirrels.
Ermakov OA; Simonov E; Surin VL; Titov SV; Brandler OV; Ivanova NV; Borisenko AV
PLoS One; 2015; 10(1):e0117201. PubMed ID: 25617768
[TBL] [Abstract][Full Text] [Related]
8. Numt Parser: Automated identification and removal of nuclear mitochondrial pseudogenes (numts) for accurate mitochondrial genome reconstruction in Panthera.
de Flamingh A; Rivera-Colón AG; Gnoske TP; Kerbis Peterhans JC; Catchen J; Malhi RS; Roca AL
J Hered; 2023 Apr; 114(2):120-130. PubMed ID: 36525576
[TBL] [Abstract][Full Text] [Related]
9. A cryptic, intergeneric cytochrome c oxidase I pseudogene in tyrant flycatchers (family: Tyrannidae).
Kerr KC
Genome; 2010 Dec; 53(12):1103-9. PubMed ID: 21164542
[TBL] [Abstract][Full Text] [Related]
10. coil: an R package for cytochrome
Nugent CM; Elliott TA; Ratnasingham S; Adamowicz SJ
Genome; 2020 Jun; 63(6):291-305. PubMed ID: 32406757
[TBL] [Abstract][Full Text] [Related]
11. Interrogating 1000 insect genomes for NUMTs: A risk assessment for estimates of species richness.
Hebert PDN; Bock DG; Prosser SWJ
PLoS One; 2023; 18(6):e0286620. PubMed ID: 37289794
[TBL] [Abstract][Full Text] [Related]
12. Nuclear mitochondrial pseudogenes in Austinograea alayseae hydrothermal vent crabs (Crustacea: Bythograeidae): effects on DNA barcoding.
Kim SJ; Lee KY; Ju SJ
Mol Ecol Resour; 2013 Sep; 13(5):781-7. PubMed ID: 23663201
[TBL] [Abstract][Full Text] [Related]
13. The Mighty NUMT: Mitochondrial DNA Flexing Its Code in the Nuclear Genome.
Xue L; Moreira JD; Smith KK; Fetterman JL
Biomolecules; 2023 Apr; 13(5):. PubMed ID: 37238623
[TBL] [Abstract][Full Text] [Related]
14. Assessing the effects of primer specificity on eliminating numt coamplification in DNA barcoding: a case study from Orthoptera (Arthropoda: Insecta).
Moulton MJ; Song H; Whiting MF
Mol Ecol Resour; 2010 Jul; 10(4):615-27. PubMed ID: 21565066
[TBL] [Abstract][Full Text] [Related]
15. Development of internal COI primers to improve and extend barcoding of fruit flies (Diptera: Tephritidae: Dacini).
Krosch MN; Strutt F; Blacket MJ; Batovska J; Starkie M; Clarke AR; Cameron SL; Schutze MK
Insect Sci; 2020 Feb; 27(1):143-158. PubMed ID: 29873880
[TBL] [Abstract][Full Text] [Related]
16. Low number of mitochondrial pseudogenes in the chicken (Gallus gallus) nuclear genome: implications for molecular inference of population history and phylogenetics.
Pereira SL; Baker AJ
BMC Evol Biol; 2004 Jun; 4():17. PubMed ID: 15219233
[TBL] [Abstract][Full Text] [Related]
17. DNA barcoding of the rodent genus
da Cruz MOR; Weksler M; Bonvicino CR; Bezerra AMR; Prosdocimi F; Furtado C; Geise L; Catzeflis F; de Thoisy B; de Oliveira LFB; Silva C; de Oliveira JA
Mitochondrial DNA A DNA Mapp Seq Anal; 2019 Jul; 30(5):702-712. PubMed ID: 31208245
[TBL] [Abstract][Full Text] [Related]
18. Using secondary structure to identify ribosomal numts: cautionary examples from the human genome.
Olson LE; Yoder AD
Mol Biol Evol; 2002 Jan; 19(1):93-100. PubMed ID: 11752194
[TBL] [Abstract][Full Text] [Related]
19. Debar: A sequence-by-sequence denoiser for COI-5P DNA barcode data.
Nugent CM; Elliott TA; Ratnasingham S; Hebert PDN; Adamowicz SJ
Mol Ecol Resour; 2021 Nov; 21(8):2832-2846. PubMed ID: 33749132
[TBL] [Abstract][Full Text] [Related]
20. [Separation and characterization of mitochondrial COI pseudogenes in Scylla paramamosain].
Zhang FY; Ma LB; Qiao ZG; Ma CY
Yi Chuan; 2006 Jan; 28(1):43-9. PubMed ID: 16469716
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]