These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

90 related articles for article (PubMed ID: 34011993)

  • 1. Author Correction: RADICL-seq identifies general and cell type-specific principles of genome-wide RNA-chromatin interactions.
    Bonetti A; Agostini F; Suzuki AM; Hashimoto K; Pascarella G; Gimenez J; Roos L; Nash AJ; Ghilotti M; Cameron CJF; Valentine M; Medvedeva YA; Noguchi S; Agirre E; Kashi K; Samudyata ; Luginbühl J; Cazzoli R; Agrawal S; Luscombe NM; Blanchette M; Kasukawa T; de Hoon M; Arner E; Lenhard B; Plessy C; Castelo-Branco G; Orlando V; Carninci P
    Nat Commun; 2021 May; 12(1):3128. PubMed ID: 34011993
    [No Abstract]   [Full Text] [Related]  

  • 2. GRID-seq for comprehensive analysis of global RNA-chromatin interactions.
    Zhou B; Li X; Luo D; Lim DH; Zhou Y; Fu XD
    Nat Protoc; 2019 Jul; 14(7):2036-2068. PubMed ID: 31175345
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Using ATAC-seq and RNA-seq to increase resolution in GRN connectivity.
    Lowe EK; Cuomo C; Voronov D; Arnone MI
    Methods Cell Biol; 2019; 151():115-126. PubMed ID: 30948003
    [TBL] [Abstract][Full Text] [Related]  

  • 4. methyl-ATAC-seq measures DNA methylation at accessible chromatin.
    Spektor R; Tippens ND; Mimoso CA; Soloway PD
    Genome Res; 2019 Jun; 29(6):969-977. PubMed ID: 31160376
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mapping Transcriptome-Wide and Genome-Wide RNA-DNA Contacts with Chromatin-Associated RNA Sequencing (ChAR-seq).
    Limouse C; Jukam D; Smith OK; Fryer KA; Straight AF
    Methods Mol Biol; 2020; 2161():115-142. PubMed ID: 32681510
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MPE-seq, a new method for the genome-wide analysis of chromatin structure.
    Ishii H; Kadonaga JT; Ren B
    Proc Natl Acad Sci U S A; 2015 Jul; 112(27):E3457-65. PubMed ID: 26080409
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Author Correction: GRID-seq for comprehensive analysis of global RNA-chromatin interactions.
    Zhou B; Li X; Luo D; Lim DH; Zhou Y; Fu XD
    Nat Protoc; 2020 Jun; 15(6):2140. PubMed ID: 32060493
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Defining Regulatory Elements in the Human Genome Using Nucleosome Occupancy and Methylome Sequencing (NOMe-Seq).
    Rhie SK; Schreiner S; Farnham PJ
    Methods Mol Biol; 2018; 1766():209-229. PubMed ID: 29605855
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genome-wide mapping of histone H3 lysine 4 trimethylation in Eucalyptus grandis developing xylem.
    Hussey SG; Mizrachi E; Groover A; Berger DK; Myburg AA
    BMC Plant Biol; 2015 May; 15():117. PubMed ID: 25957781
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Integration of ATAC-seq and RNA-seq identifies human alpha cell and beta cell signature genes.
    Ackermann AM; Wang Z; Schug J; Naji A; Kaestner KH
    Mol Metab; 2016 Mar; 5(3):233-244. PubMed ID: 26977395
    [TBL] [Abstract][Full Text] [Related]  

  • 11. How to Tackle Challenging ChIP-Seq, with Long-Range Cross-Linking, Using ATRX as an Example.
    Truch J; Telenius J; Higgs DR; Gibbons RJ
    Methods Mol Biol; 2018; 1832():105-130. PubMed ID: 30073524
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq.
    Grbesa I; Tannenbaum M; Sarusi-Portuguez A; Schwartz M; Hakim O
    J Vis Exp; 2017 Nov; (129):. PubMed ID: 29155775
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Revolution of nephrology research by deep sequencing: ChIP-seq and RNA-seq.
    Mimura I; Kanki Y; Kodama T; Nangaku M
    Kidney Int; 2014 Jan; 85(1):31-8. PubMed ID: 23986147
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments.
    Wu F; Olson BG; Yao J
    J Vis Exp; 2016 Jan; (107):e53620. PubMed ID: 26862720
    [TBL] [Abstract][Full Text] [Related]  

  • 15. 4C-ker: A Method to Reproducibly Identify Genome-Wide Interactions Captured by 4C-Seq Experiments.
    Raviram R; Rocha PP; Müller CL; Miraldi ER; Badri S; Fu Y; Swanzey E; Proudhon C; Snetkova V; Bonneau R; Skok JA
    PLoS Comput Biol; 2016 Mar; 12(3):e1004780. PubMed ID: 26938081
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Genome-wide Mapping of Protein-DNA Interactions with ChEC-seq in Saccharomyces cerevisiae.
    Grünberg S; Zentner GE
    J Vis Exp; 2017 Jun; (124):. PubMed ID: 28605389
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Chromatin-associated RNA sequencing (ChAR-seq) maps genome-wide RNA-to-DNA contacts.
    Bell JC; Jukam D; Teran NA; Risca VI; Smith OK; Johnson WL; Skotheim JM; Greenleaf WJ; Straight AF
    Elife; 2018 Apr; 7():. PubMed ID: 29648534
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Integrated Analysis of Whole-Genome ChIP-Seq and RNA-Seq Data of Primary Head and Neck Tumor Samples Associates HPV Integration Sites with Open Chromatin Marks.
    Kelley DZ; Flam EL; Izumchenko E; Danilova LV; Wulf HA; Guo T; Singman DA; Afsari B; Skaist AM; Considine M; Welch JA; Stavrovskaya E; Bishop JA; Westra WH; Khan Z; Koch WM; Sidransky D; Wheelan SJ; Califano JA; Favorov AV; Fertig EJ; Gaykalova DA
    Cancer Res; 2017 Dec; 77(23):6538-6550. PubMed ID: 28947419
    [TBL] [Abstract][Full Text] [Related]  

  • 19. 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs.
    Ibn-Salem J; Andrade-Navarro MA
    BMC Genomics; 2019 Oct; 20(1):777. PubMed ID: 31653198
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq.
    Johannes F; Wardenaar R; Colomé-Tatché M; Mousson F; de Graaf P; Mokry M; Guryev V; Timmers HT; Cuppen E; Jansen RC
    Bioinformatics; 2010 Apr; 26(8):1000-6. PubMed ID: 20208068
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.