BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

639 related articles for article (PubMed ID: 34035045)

  • 1. Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomic data with nonuniform cellular densities.
    Miller BF; Bambah-Mukku D; Dulac C; Zhuang X; Fan J
    Genome Res; 2021 Oct; 31(10):1843-1855. PubMed ID: 34035045
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Spatial transcriptome profiling by MERFISH reveals subcellular RNA compartmentalization and cell cycle-dependent gene expression.
    Xia C; Fan J; Emanuel G; Hao J; Zhuang X
    Proc Natl Acad Sci U S A; 2019 Sep; 116(39):19490-19499. PubMed ID: 31501331
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Computational solutions for spatial transcriptomics.
    Kleino I; FrolovaitÄ— P; Suomi T; Elo LL
    Comput Struct Biotechnol J; 2022; 20():4870-4884. PubMed ID: 36147664
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
    Chen KH; Boettiger AN; Moffitt JR; Wang S; Zhuang X
    Science; 2015 Apr; 348(6233):aaa6090. PubMed ID: 25858977
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Concordance of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing.
    Liu J; Tran V; Vemuri VNP; Byrne A; Borja M; Kim YJ; Agarwal S; Wang R; Awayan K; Murti A; Taychameekiatchai A; Wang B; Emanuel G; He J; Haliburton J; Oliveira Pisco A; Neff NF
    Life Sci Alliance; 2023 Jan; 6(1):. PubMed ID: 36526371
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Molecularly defined and spatially resolved cell atlas of the whole mouse brain.
    Zhang M; Pan X; Jung W; Halpern AR; Eichhorn SW; Lei Z; Cohen L; Smith KA; Tasic B; Yao Z; Zeng H; Zhuang X
    Nature; 2023 Dec; 624(7991):343-354. PubMed ID: 38092912
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Recent advances in spatially resolved transcriptomics: challenges and opportunities.
    Lee J; Yoo M; Choi J
    BMB Rep; 2022 Mar; 55(3):113-124. PubMed ID: 35168703
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MERFISHing for spatial context.
    Shalek AK; Satija R
    Trends Immunol; 2015 Jul; 36(7):390-1. PubMed ID: 26013647
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RNA Imaging with Multiplexed Error-Robust Fluorescence In Situ Hybridization (MERFISH).
    Moffitt JR; Zhuang X
    Methods Enzymol; 2016; 572():1-49. PubMed ID: 27241748
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Subcellular spatially resolved gene neighborhood networks in single cells.
    Fang Z; Ford AJ; Hu T; Zhang N; Mantalaris A; Coskun AF
    Cell Rep Methods; 2023 May; 3(5):100476. PubMed ID: 37323566
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Placing RNA in context and space - methods for spatially resolved transcriptomics.
    Strell C; Hilscher MM; Laxman N; Svedlund J; Wu C; Yokota C; Nilsson M
    FEBS J; 2019 Apr; 286(8):1468-1481. PubMed ID: 29542254
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Omics goes spatial epigenomics.
    Schueder F; Bewersdorf J
    Cell; 2022 Nov; 185(23):4253-4255. PubMed ID: 36368304
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Cell segmentation-free inference of cell types from in situ transcriptomics data.
    Park J; Choi W; Tiesmeyer S; Long B; Borm LE; Garren E; Nguyen TN; Tasic B; Codeluppi S; Graf T; Schlesner M; Stegle O; Eils R; Ishaque N
    Nat Commun; 2021 Jun; 12(1):3545. PubMed ID: 34112806
    [TBL] [Abstract][Full Text] [Related]  

  • 14. High-throughput single-cell gene-expression profiling with multiplexed error-robust fluorescence in situ hybridization.
    Moffitt JR; Hao J; Wang G; Chen KH; Babcock HP; Zhuang X
    Proc Natl Acad Sci U S A; 2016 Sep; 113(39):11046-51. PubMed ID: 27625426
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk.
    Shao X; Li C; Yang H; Lu X; Liao J; Qian J; Wang K; Cheng J; Yang P; Chen H; Xu X; Fan X
    Nat Commun; 2022 Jul; 13(1):4429. PubMed ID: 35908020
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Cell segmentation in imaging-based spatial transcriptomics.
    Petukhov V; Xu RJ; Soldatov RA; Cadinu P; Khodosevich K; Moffitt JR; Kharchenko PV
    Nat Biotechnol; 2022 Mar; 40(3):345-354. PubMed ID: 34650268
    [TBL] [Abstract][Full Text] [Related]  

  • 17. High-performance multiplexed fluorescence in situ hybridization in culture and tissue with matrix imprinting and clearing.
    Moffitt JR; Hao J; Bambah-Mukku D; Lu T; Dulac C; Zhuang X
    Proc Natl Acad Sci U S A; 2016 Dec; 113(50):14456-14461. PubMed ID: 27911841
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Spatial reconstruction of single-cell gene expression data.
    Satija R; Farrell JA; Gennert D; Schier AF; Regev A
    Nat Biotechnol; 2015 May; 33(5):495-502. PubMed ID: 25867923
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A molecularly defined and spatially resolved cell atlas of the whole mouse brain.
    Zhang M; Pan X; Jung W; Halpern A; Eichhorn SW; Lei Z; Cohen L; Smith KA; Tasic B; Yao Z; Zeng H; Zhuang X
    bioRxiv; 2023 Mar; ():. PubMed ID: 36945367
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multiplexed detection of RNA using MERFISH and branched DNA amplification.
    Xia C; Babcock HP; Moffitt JR; Zhuang X
    Sci Rep; 2019 May; 9(1):7721. PubMed ID: 31118500
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 32.