These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
251 related articles for article (PubMed ID: 34035046)
1. Analysis of alternative polyadenylation from single-cell RNA-seq using scDaPars reveals cell subpopulations invisible to gene expression. Gao Y; Li L; Amos CI; Li W Genome Res; 2021 Oct; 31(10):1856-1866. PubMed ID: 34035046 [TBL] [Abstract][Full Text] [Related]
2. Computational analysis of alternative polyadenylation from standard RNA-seq and single-cell RNA-seq data. Gao Y; Li W Methods Enzymol; 2021; 655():225-243. PubMed ID: 34183123 [TBL] [Abstract][Full Text] [Related]
4. scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data. Ye C; Zhou Q; Wu X; Yu C; Ji G; Saban DR; Li QQ Bioinformatics; 2020 Feb; 36(4):1262-1264. PubMed ID: 31557285 [TBL] [Abstract][Full Text] [Related]
5. scAPAmod: Profiling Alternative Polyadenylation Modalities in Single Cells from Single-Cell RNA-Seq Data. Qian L; Fu H; Mou Y; Lin W; Ye L; Ji G Int J Mol Sci; 2022 Jul; 23(15):. PubMed ID: 35897701 [TBL] [Abstract][Full Text] [Related]
6. APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data. Fahmi NA; Ahmed KT; Chang JW; Nassereddeen H; Fan D; Yong J; Zhang W BMC Bioinformatics; 2022 Sep; 23(Suppl 3):396. PubMed ID: 36171568 [TBL] [Abstract][Full Text] [Related]
7. Alternative polyadenylation of single cells delineates cell types and serves as a prognostic marker in early stage breast cancer. Kim N; Chung W; Eum HH; Lee HO; Park WY PLoS One; 2019; 14(5):e0217196. PubMed ID: 31100099 [TBL] [Abstract][Full Text] [Related]
8. scAPAdb: a comprehensive database of alternative polyadenylation at single-cell resolution. Zhu S; Lian Q; Ye W; Qin W; Wu Z; Ji G; Wu X Nucleic Acids Res; 2022 Jan; 50(D1):D365-D370. PubMed ID: 34508354 [TBL] [Abstract][Full Text] [Related]
9. Cell-type-specific analysis of alternative polyadenylation using single-cell transcriptomics data. Shulman ED; Elkon R Nucleic Acids Res; 2019 Nov; 47(19):10027-10039. PubMed ID: 31501864 [TBL] [Abstract][Full Text] [Related]
10. A Survey on Methods for Predicting Polyadenylation Sites from DNA Sequences, Bulk RNA-seq, and Single-cell RNA-seq. Ye W; Lian Q; Ye C; Wu X Genomics Proteomics Bioinformatics; 2023 Feb; 21(1):67-83. PubMed ID: 36167284 [TBL] [Abstract][Full Text] [Related]
11. scMAPA: Identification of cell-type-specific alternative polyadenylation in complex tissues. Bai Y; Qin Y; Fan Z; Morrison RM; Nam K; Zarour HM; Koldamova R; Padiath QS; Kim S; Park HJ Gigascience; 2022 Apr; 11():. PubMed ID: 35488860 [TBL] [Abstract][Full Text] [Related]
12. scAPAatlas: an atlas of alternative polyadenylation across cell types in human and mouse. Yang X; Tong Y; Liu G; Yuan J; Yang Y Nucleic Acids Res; 2022 Jan; 50(D1):D356-D364. PubMed ID: 34643729 [TBL] [Abstract][Full Text] [Related]
13. Accurate transcriptome-wide identification and quantification of alternative polyadenylation from RNA-seq data with APAIQ. Long Y; Zhang B; Tian S; Chan JJ; Zhou J; Li Z; Li Y; An Z; Liao X; Wang Y; Sun S; Xu Y; Tay Y; Chen W; Gao X Genome Res; 2023 Apr; 33(4):644-657. PubMed ID: 37117035 [TBL] [Abstract][Full Text] [Related]
14. Extensive Involvement of Alternative Polyadenylation in Single-Nucleus Neurons. Wang Y; Feng W; Xu S; He B Genes (Basel); 2020 Jun; 11(6):. PubMed ID: 32604877 [TBL] [Abstract][Full Text] [Related]
15. scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data. Wu X; Liu T; Ye C; Ye W; Ji G Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33142319 [TBL] [Abstract][Full Text] [Related]
16. stAPAminer: Mining Spatial Patterns of Alternative Polyadenylation for Spatially Resolved Transcriptomic Studies. Ji G; Tang Q; Zhu S; Zhu J; Ye P; Xia S; Wu X Genomics Proteomics Bioinformatics; 2023 Jun; 21(3):601-618. PubMed ID: 36669641 [TBL] [Abstract][Full Text] [Related]
17. Dynamics of alternative polyadenylation in single root cells of Bi X; Zhu S; Liu F; Wu X Front Plant Sci; 2024; 15():1437118. PubMed ID: 39372861 [TBL] [Abstract][Full Text] [Related]
18. Simultaneous studies of gene expression and alternative polyadenylation in primary human immune cells. Wilton J; Tellier M; Nojima T; Costa AM; Oliveira MJ; Moreira A Methods Enzymol; 2021; 655():349-399. PubMed ID: 34183129 [TBL] [Abstract][Full Text] [Related]
19. SCAPTURE: a deep learning-embedded pipeline that captures polyadenylation information from 3' tag-based RNA-seq of single cells. Li GW; Nan F; Yuan GH; Liu CX; Liu X; Chen LL; Tian B; Yang L Genome Biol; 2021 Aug; 22(1):221. PubMed ID: 34376223 [TBL] [Abstract][Full Text] [Related]
20. PolyAMiner-Bulk is a deep learning-based algorithm that decodes alternative polyadenylation dynamics from bulk RNA-seq data. Jonnakuti VS; Wagner EJ; Maletić-Savatić M; Liu Z; Yalamanchili HK Cell Rep Methods; 2024 Feb; 4(2):100707. PubMed ID: 38325383 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]