147 related articles for article (PubMed ID: 34038140)
1. Comparative Evaluation of MaxQuant and Proteome Discoverer MS1-Based Protein Quantification Tools.
Palomba A; Abbondio M; Fiorito G; Uzzau S; Pagnozzi D; Tanca A
J Proteome Res; 2021 Jul; 20(7):3497-3507. PubMed ID: 34038140
[TBL] [Abstract][Full Text] [Related]
2. Comparative evaluation of label-free quantification strategies.
Zhao L; Cong X; Zhai L; Hu H; Xu JY; Zhao W; Zhu M; Tan M; Ye BC
J Proteomics; 2020 Mar; 215():103669. PubMed ID: 31987925
[TBL] [Abstract][Full Text] [Related]
3. An IonStar Experimental Strategy for MS1 Ion Current-Based Quantification Using Ultrahigh-Field Orbitrap: Reproducible, In-Depth, and Accurate Protein Measurement in Large Cohorts.
Shen X; Shen S; Li J; Hu Q; Nie L; Tu C; Wang X; Orsburn B; Wang J; Qu J
J Proteome Res; 2017 Jul; 16(7):2445-2456. PubMed ID: 28412812
[TBL] [Abstract][Full Text] [Related]
4. Ultra-High-Resolution IonStar Strategy Enhancing Accuracy and Precision of MS1-Based Proteomics and an Extensive Comparison with State-of-the-Art SWATH-MS in Large-Cohort Quantification.
Wang X; Jin L; Hu C; Shen S; Qian S; Ma M; Zhu X; Li F; Wang J; Tian Y; Qu J
Anal Chem; 2021 Mar; 93(11):4884-4893. PubMed ID: 33687211
[TBL] [Abstract][Full Text] [Related]
5. Plant Phosphopeptide Identification and Label-Free Quantification by MaxQuant and Proteome Discoverer Software.
Li S; Zan H; Zhu Z; Lu D; Krall L
Methods Mol Biol; 2021; 2358():179-187. PubMed ID: 34270055
[TBL] [Abstract][Full Text] [Related]
6. High-quality and robust protein quantification in large clinical/pharmaceutical cohorts with IonStar proteomics investigation.
Shen S; Wang X; Zhu X; Rasam S; Ma M; Huo S; Qian S; Zhang M; Qu M; Hu C; Jin L; Tian Y; Sethi S; Poulsen D; Wang J; Tu C; Qu J
Nat Protoc; 2023 Mar; 18(3):700-731. PubMed ID: 36494494
[TBL] [Abstract][Full Text] [Related]
7. MS1-based label-free proteomics using a quadrupole orbitrap mass spectrometer.
Shalit T; Elinger D; Savidor A; Gabashvili A; Levin Y
J Proteome Res; 2015 Apr; 14(4):1979-86. PubMed ID: 25780947
[TBL] [Abstract][Full Text] [Related]
8. IonStar enables high-precision, low-missing-data proteomics quantification in large biological cohorts.
Shen X; Shen S; Li J; Hu Q; Nie L; Tu C; Wang X; Poulsen DJ; Orsburn BC; Wang J; Qu J
Proc Natl Acad Sci U S A; 2018 May; 115(21):E4767-E4776. PubMed ID: 29743190
[TBL] [Abstract][Full Text] [Related]
9. MS1 ion current-based quantitative proteomics: A promising solution for reliable analysis of large biological cohorts.
Wang X; Shen S; Rasam SS; Qu J
Mass Spectrom Rev; 2019 Nov; 38(6):461-482. PubMed ID: 30920002
[TBL] [Abstract][Full Text] [Related]
10. Comparative Evaluation of Proteome Discoverer and FragPipe for the TMT-Based Proteome Quantification.
He T; Liu Y; Zhou Y; Li L; Wang H; Chen S; Gao J; Jiang W; Yu Y; Ge W; Chang HY; Fan Z; Nesvizhskii AI; Guo T; Sun Y
J Proteome Res; 2022 Dec; 21(12):3007-3015. PubMed ID: 36315902
[TBL] [Abstract][Full Text] [Related]
11. A peptide-retrieval strategy enables significant improvement of quantitative performance without compromising confidence of identification.
Tu C; Shen S; Sheng Q; Shyr Y; Qu J
J Proteomics; 2017 Jan; 152():276-282. PubMed ID: 27903464
[TBL] [Abstract][Full Text] [Related]
12. LFQ-Analyst: An Easy-To-Use Interactive Web Platform To Analyze and Visualize Label-Free Proteomics Data Preprocessed with MaxQuant.
Shah AD; Goode RJA; Huang C; Powell DR; Schittenhelm RB
J Proteome Res; 2020 Jan; 19(1):204-211. PubMed ID: 31657565
[TBL] [Abstract][Full Text] [Related]
13. Label-free plasma proteomics for the identification of the putative biomarkers of oral squamous cell carcinoma.
Gautam SS; Singh RP; Karsauliya K; Sonker AK; Reddy PJ; Mehrotra D; Gupta S; Singh S; Kumar R; Singh SP
J Proteomics; 2022 May; 259():104541. PubMed ID: 35231661
[TBL] [Abstract][Full Text] [Related]
14. MaxQuant.Live Enables Global Targeting of More Than 25,000 Peptides.
Wichmann C; Meier F; Virreira Winter S; Brunner AD; Cox J; Mann M
Mol Cell Proteomics; 2019 May; 18(5):982-994. PubMed ID: 30755466
[TBL] [Abstract][Full Text] [Related]
15. The MaxQuant computational platform for mass spectrometry-based shotgun proteomics.
Tyanova S; Temu T; Cox J
Nat Protoc; 2016 Dec; 11(12):2301-2319. PubMed ID: 27809316
[TBL] [Abstract][Full Text] [Related]
16. Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.
Cox J; Hein MY; Luber CA; Paron I; Nagaraj N; Mann M
Mol Cell Proteomics; 2014 Sep; 13(9):2513-26. PubMed ID: 24942700
[TBL] [Abstract][Full Text] [Related]
17. Quantitative Proteomics in Yeast : From bSLIM and Proteome Discoverer Outputs to Graphical Assessment of the Significance of Protein Quantification Scores.
Sénécaut N; Poulain P; Lignières L; Terrier S; Legros V; Chevreux G; Lelandais G; Camadro JM
Methods Mol Biol; 2022; 2477():275-292. PubMed ID: 35524123
[TBL] [Abstract][Full Text] [Related]
18. Isobaric Matching between Runs and Novel PSM-Level Normalization in MaxQuant Strongly Improve Reporter Ion-Based Quantification.
Yu SH; Kyriakidou P; Cox J
J Proteome Res; 2020 Oct; 19(10):3945-3954. PubMed ID: 32892627
[TBL] [Abstract][Full Text] [Related]
19. NSI and NSMT: usages of MS/MS fragment ion intensity for sensitive differential proteome detection and accurate protein fold change calculation in relative label-free proteome quantification.
Wu Q; Zhao Q; Liang Z; Qu Y; Zhang L; Zhang Y
Analyst; 2012 Jul; 137(13):3146-53. PubMed ID: 22582177
[TBL] [Abstract][Full Text] [Related]
20. Block Design with Common Reference Samples Enables Robust Large-Scale Label-Free Quantitative Proteome Profiling.
Zhang T; Gaffrey MJ; Monroe ME; Thomas DG; Weitz KK; Piehowski PD; Petyuk VA; Moore RJ; Thrall BD; Qian WJ
J Proteome Res; 2020 Jul; 19(7):2863-2872. PubMed ID: 32407631
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]