These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
180 related articles for article (PubMed ID: 34046055)
1. MPRAdecoder: Processing of the Raw MPRA Data With Letiagina AE; Omelina ES; Ivankin AV; Pindyurin AV Front Genet; 2021; 12():618189. PubMed ID: 34046055 [TBL] [Abstract][Full Text] [Related]
2. Optimized PCR conditions minimizing the formation of chimeric DNA molecules from MPRA plasmid libraries. Omelina ES; Ivankin AV; Letiagina AE; Pindyurin AV BMC Genomics; 2019 Jul; 20(Suppl 7):536. PubMed ID: 31291895 [TBL] [Abstract][Full Text] [Related]
3. Plasmid and Sequencing Library Preparation for CRISPRi Barcoded Expression Reporter Sequencing (CiBER-seq) in Muller RY; Meacham ZA; Ingolia NT Bio Protoc; 2022 Apr; 12(7):e4376. PubMed ID: 35530514 [TBL] [Abstract][Full Text] [Related]
4. Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively parallel reporter assays. Movva R; Greenside P; Marinov GK; Nair S; Shrikumar A; Kundaje A PLoS One; 2019; 14(6):e0218073. PubMed ID: 31206543 [TBL] [Abstract][Full Text] [Related]
5. Massively parallel reporter assay: a novel technique for analyzing the regulation of gene expression. Yuan M; Li H; Wang SZ Yi Chuan; 2023 Oct; 45(10):859-873. PubMed ID: 37872110 [TBL] [Abstract][Full Text] [Related]
6. Sequence-based correction of barcode bias in massively parallel reporter assays. Lee D; Kapoor A; Lee C; Mudgett M; Beer MA; Chakravarti A Genome Res; 2021 Sep; 31(9):1638-1645. PubMed ID: 34285053 [TBL] [Abstract][Full Text] [Related]
7. QuASAR-MPRA: accurate allele-specific analysis for massively parallel reporter assays. Kalita CA; Moyerbrailean GA; Brown C; Wen X; Luca F; Pique-Regi R Bioinformatics; 2018 Mar; 34(5):787-794. PubMed ID: 29028988 [TBL] [Abstract][Full Text] [Related]
8. lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements. Gordon MG; Inoue F; Martin B; Schubach M; Agarwal V; Whalen S; Feng S; Zhao J; Ashuach T; Ziffra R; Kreimer A; Georgakopoulos-Soares I; Yosef N; Ye CJ; Pollard KS; Shendure J; Kircher M; Ahituv N Nat Protoc; 2020 Aug; 15(8):2387-2412. PubMed ID: 32641802 [TBL] [Abstract][Full Text] [Related]
10. Statistical considerations for the analysis of massively parallel reporter assays data. Qiao D; Zigler CM; Cho MH; Silverman EK; Zhou X; Castaldi PJ; Laird NH Genet Epidemiol; 2020 Oct; 44(7):785-794. PubMed ID: 32681690 [TBL] [Abstract][Full Text] [Related]
11. Bayesian modelling of high-throughput sequencing assays with malacoda. Ghazi AR; Kong X; Chen ES; Edelstein LC; Shaw CA PLoS Comput Biol; 2020 Jul; 16(7):e1007504. PubMed ID: 32692749 [TBL] [Abstract][Full Text] [Related]
12. Focus on your locus with a massively parallel reporter assay. McAfee JC; Bell JL; Krupa O; Matoba N; Stein JL; Won H J Neurodev Disord; 2022 Sep; 14(1):50. PubMed ID: 36085003 [TBL] [Abstract][Full Text] [Related]
13. Massively parallel reporter assays and mouse transgenic assays provide complementary information about neuronal enhancer activity. Kosicki M; Cintrón DL; Page NF; Georgakopoulos-Soares I; Akiyama JA; Plajzer-Frick I; Novak CS; Kato M; Hunter RD; von Maydell K; Barton S; Godfrey P; Beckman E; Sanders SJ; Pennacchio LA; Ahituv N bioRxiv; 2024 Apr; ():. PubMed ID: 38712228 [TBL] [Abstract][Full Text] [Related]
14. Design and Analysis of Massively Parallel Reporter Assays Using FORECAST. Gilliot PA; Gorochowski TE Methods Mol Biol; 2023; 2553():41-56. PubMed ID: 36227538 [TBL] [Abstract][Full Text] [Related]
15. Combining TSS-MPRA and sensitive TSS profile dissimilarity scoring to study the sequence determinants of transcription initiation. Guzman C; Duttke S; Zhu Y; De Arruda Saldanha C; Downes NL; Benner C; Heinz S Nucleic Acids Res; 2023 Aug; 51(15):e80. PubMed ID: 37403796 [TBL] [Abstract][Full Text] [Related]
16. Deep learning-assisted genome-wide characterization of massively parallel reporter assays. Lu F; Sossin A; Abell N; Montgomery SB; He Z Nucleic Acids Res; 2022 Nov; 50(20):11442-11454. PubMed ID: 36350674 [TBL] [Abstract][Full Text] [Related]
17. A systematic evaluation of the design and context dependencies of massively parallel reporter assays. Klein JC; Agarwal V; Inoue F; Keith A; Martin B; Kircher M; Ahituv N; Shendure J Nat Methods; 2020 Nov; 17(11):1083-1091. PubMed ID: 33046894 [TBL] [Abstract][Full Text] [Related]