These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

156 related articles for article (PubMed ID: 34048427)

  • 1. Finding recurrent RNA structural networks with fast maximal common subgraphs of edge-colored graphs.
    Soulé A; Reinharz V; Sarrazin-Gendron R; Denise A; Waldispühl J
    PLoS Comput Biol; 2021 May; 17(5):e1008990. PubMed ID: 34048427
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Towards 3D structure prediction of large RNA molecules: an integer programming framework to insert local 3D motifs in RNA secondary structure.
    Reinharz V; Major F; Waldispühl J
    Bioinformatics; 2012 Jun; 28(12):i207-14. PubMed ID: 22689763
    [TBL] [Abstract][Full Text] [Related]  

  • 3. FR3D: finding local and composite recurrent structural motifs in RNA 3D structures.
    Sarver M; Zirbel CL; Stombaugh J; Mokdad A; Leontis NB
    J Math Biol; 2008 Jan; 56(1-2):215-52. PubMed ID: 17694311
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Automated, customizable and efficient identification of 3D base pair modules with BayesPairing.
    Sarrazin-Gendron R; Reinharz V; Oliver CG; Moitessier N; Waldispühl J
    Nucleic Acids Res; 2019 Apr; 47(7):3321-3332. PubMed ID: 30828711
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure.
    Theis C; Zirbel CL; Zu Siederdissen CH; Anthon C; Hofacker IL; Nielsen H; Gorodkin J
    PLoS One; 2015; 10(10):e0139900. PubMed ID: 26509713
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Mining for recurrent long-range interactions in RNA structures reveals embedded hierarchies in network families.
    Reinharz V; Soulé A; Westhof E; Waldispühl J; Denise A
    Nucleic Acids Res; 2018 May; 46(8):3841-3851. PubMed ID: 29608773
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Classification and Identification of Non-canonical Base Pairs and Structural Motifs.
    Sarrazin-Gendron R; Waldispühl J; Reinharz V
    Methods Mol Biol; 2024; 2726():143-168. PubMed ID: 38780731
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Going beyond base-pairs: topology-based characterization of base-multiplets in RNA.
    Bhattacharya S; Jhunjhunwala A; Halder A; Bhattacharyya D; Mitra A
    RNA; 2019 May; 25(5):573-589. PubMed ID: 30792229
    [TBL] [Abstract][Full Text] [Related]  

  • 9. An extended dual graph library and partitioning algorithm applicable to pseudoknotted RNA structures.
    Jain S; Saju S; Petingi L; Schlick T
    Methods; 2019 Jun; 162-163():74-84. PubMed ID: 30928508
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RNA structure and dynamics: a base pairing perspective.
    Halder S; Bhattacharyya D
    Prog Biophys Mol Biol; 2013 Nov; 113(2):264-83. PubMed ID: 23891726
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Prediction of consensus RNA secondary structures including pseudoknots.
    Witwer C; Hofacker IL; Stadler PF
    IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(2):66-77. PubMed ID: 17048382
    [TBL] [Abstract][Full Text] [Related]  

  • 12. F-RAG: Generating Atomic Coordinates from RNA Graphs by Fragment Assembly.
    Jain S; Schlick T
    J Mol Biol; 2017 Nov; 429(23):3587-3605. PubMed ID: 28988954
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Base pair probability estimates improve the prediction accuracy of RNA non-canonical base pairs.
    Sloma MF; Mathews DH
    PLoS Comput Biol; 2017 Nov; 13(11):e1005827. PubMed ID: 29107980
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Concurrent prediction of RNA secondary structures with pseudoknots and local 3D motifs in an integer programming framework.
    Loyer G; Reinharz V
    Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38230755
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Novel and efficient RNA secondary structure prediction using hierarchical folding.
    Jabbari H; Condon A; Zhao S
    J Comput Biol; 2008 Mar; 15(2):139-63. PubMed ID: 18312147
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Inverse folding with RNA-As-Graphs produces a large pool of candidate sequences with target topologies.
    Jain S; Tao Y; Schlick T
    J Struct Biol; 2020 Mar; 209(3):107438. PubMed ID: 31874236
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Computational prediction of riboswitch tertiary structures including pseudoknots by RAGTOP: a hierarchical graph sampling approach.
    Kim N; Zahran M; Schlick T
    Methods Enzymol; 2015; 553():115-35. PubMed ID: 25726463
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RNApdbee 2.0: multifunctional tool for RNA structure annotation.
    Zok T; Antczak M; Zurkowski M; Popenda M; Blazewicz J; Adamiak RW; Szachniuk M
    Nucleic Acids Res; 2018 Jul; 46(W1):W30-W35. PubMed ID: 29718468
    [TBL] [Abstract][Full Text] [Related]  

  • 19. K-partite RNA secondary structures.
    Jiang M; Tejada PJ; Lasisi RO; Cheng S; Fechser DS
    J Comput Biol; 2010 Jul; 17(7):915-25. PubMed ID: 20632871
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNA-As-Graphs Motif Atlas-Dual Graph Library of RNA Modules and Viral Frameshifting-Element Applications.
    Zhu Q; Petingi L; Schlick T
    Int J Mol Sci; 2022 Aug; 23(16):. PubMed ID: 36012512
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.