These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

238 related articles for article (PubMed ID: 34058988)

  • 1. A tool for analyzing and visualizing ribo-seq data at the isoform level.
    Wu WS; Tsao YH; Shiue SC; Chen TY; Tseng YY; Tseng JT
    BMC Bioinformatics; 2021 May; 22(Suppl 10):271. PubMed ID: 34058988
    [TBL] [Abstract][Full Text] [Related]  

  • 2. HRPDviewer: human ribosome profiling data viewer.
    Wu WS; Jiang YX; Chang JW; Chu YH; Chiu YH; Tsao YH; Nordling TEM; Tseng YY; Tseng JT
    Database (Oxford); 2018 Jan; 2018():. PubMed ID: 30010738
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RiboToolkit: an integrated platform for analysis and annotation of ribosome profiling data to decode mRNA translation at codon resolution.
    Liu Q; Shvarts T; Sliz P; Gregory RI
    Nucleic Acids Res; 2020 Jul; 48(W1):W218-W229. PubMed ID: 32427338
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data.
    Michel AM; Mullan JP; Velayudhan V; O'Connor PB; Donohue CA; Baranov PV
    RNA Biol; 2016; 13(3):316-9. PubMed ID: 26821742
    [TBL] [Abstract][Full Text] [Related]  

  • 5. DeepShape: estimating isoform-level ribosome abundance and distribution with Ribo-seq data.
    Cui H; Hu H; Zeng J; Chen T
    BMC Bioinformatics; 2019 Dec; 20(Suppl 24):678. PubMed ID: 31861979
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Exploring Ribosome Positioning on Translating Transcripts with Ribosome Profiling.
    Spealman P; Wang H; May G; Kingsford C; McManus CJ
    Methods Mol Biol; 2016; 1358():71-97. PubMed ID: 26463378
    [TBL] [Abstract][Full Text] [Related]  

  • 7. STATR: A simple analysis pipeline of Ribo-Seq in bacteria.
    Choe D; Palsson B; Cho BK
    J Microbiol; 2020 Mar; 58(3):217-226. PubMed ID: 31989542
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RiboA: a web application to identify ribosome A-site locations in ribosome profiling data.
    Shao D; Ahmed N; Soni N; O'Brien EP
    BMC Bioinformatics; 2021 Mar; 22(1):156. PubMed ID: 33765913
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Detecting translational regulation by change point analysis of ribosome profiling data sets.
    Zupanic A; Meplan C; Grellscheid SN; Mathers JC; Kirkwood TB; Hesketh JE; Shanley DP
    RNA; 2014 Oct; 20(10):1507-18. PubMed ID: 25147239
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PausePred and Rfeet: webtools for inferring ribosome pauses and visualizing footprint density from ribosome profiling data.
    Kumari R; Michel AM; Baranov PV
    RNA; 2018 Oct; 24(10):1297-1304. PubMed ID: 30049792
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Poly-A Tailing and Adaptor Ligation Methods for Ribo-Seq Library Construction.
    Qiu J; Qian SB
    Methods Mol Biol; 2021; 2252():221-237. PubMed ID: 33765278
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RiboDiPA: a novel tool for differential pattern analysis in Ribo-seq data.
    Li K; Hope CM; Wang XA; Wang JP
    Nucleic Acids Res; 2020 Dec; 48(21):12016-12029. PubMed ID: 33211868
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Analysis of Ribosome Profiling Data.
    Legrand C; Duc KD; Tuorto F
    Methods Mol Biol; 2022; 2428():133-156. PubMed ID: 35171478
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RPFdb v2.0: an updated database for genome-wide information of translated mRNA generated from ribosome profiling.
    Wang H; Yang L; Wang Y; Chen L; Li H; Xie Z
    Nucleic Acids Res; 2019 Jan; 47(D1):D230-D234. PubMed ID: 30335166
    [TBL] [Abstract][Full Text] [Related]  

  • 15. [Ribosome profiling as an innovative tool to study the process of protein synthesis].
    Kaźmierczak U; Kwaśniak-Owczarek M
    Postepy Biochem; 2019 Mar; 65(1):41-51. PubMed ID: 30901182
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Ribosome profiling in plants: what is not lost in translation?
    Kage U; Powell JJ; Gardiner DM; Kazan K
    J Exp Bot; 2020 Sep; 71(18):5323-5332. PubMed ID: 32459844
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Ribosome Profiling of Plants.
    Sonia J; Kanodia P; Lozier Z; Miller WA
    Methods Mol Biol; 2024; 2724():139-163. PubMed ID: 37987904
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ribosome profiling of HEK293T cells overexpressing codon optimized coagulation factor IX.
    Alexaki A; Kames J; Hettiarachchi GK; Athey JC; Katneni UK; Hunt RC; Hamasaki-Katagiri N; Holcomb DD; DiCuccio M; Bar H; Komar AA; Kimchi-Sarfaty C
    F1000Res; 2020; 9():174. PubMed ID: 33014344
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RiboGalaxy: A Galaxy-based Web Platform for Ribosome Profiling Data Processing - 2023 Update.
    Fedorova AD; Tierney JAS; Michel AM; Baranov PV
    J Mol Biol; 2023 Jul; 435(14):168043. PubMed ID: 37356899
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Translation Analysis at the Genome Scale by Ribosome Profiling.
    Baudin-Baillieu A; Hatin I; Legendre R; Namy O
    Methods Mol Biol; 2016; 1361():105-24. PubMed ID: 26483019
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.