316 related articles for article (PubMed ID: 34060911)
1. Evaluating and Improving Small Subunit rRNA PCR Primer Coverage for Bacteria, Archaea, and Eukaryotes Using Metagenomes from Global Ocean Surveys.
McNichol J; Berube PM; Biller SJ; Fuhrman JA
mSystems; 2021 Jun; 6(3):e0056521. PubMed ID: 34060911
[TBL] [Abstract][Full Text] [Related]
2. Comprehensive single-PCR 16S and 18S rRNA community analysis validated with mock communities, and estimation of sequencing bias against 18S.
Yeh YC; McNichol J; Needham DM; Fichot EB; Berdjeb L; Fuhrman JA
Environ Microbiol; 2021 Jun; 23(6):3240-3250. PubMed ID: 33938123
[TBL] [Abstract][Full Text] [Related]
3. Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.
Parada AE; Needham DM; Fuhrman JA
Environ Microbiol; 2016 May; 18(5):1403-14. PubMed ID: 26271760
[TBL] [Abstract][Full Text] [Related]
4. Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils.
Zhao J; Rodriguez J; Martens-Habbena W
Front Microbiol; 2023; 14():1140487. PubMed ID: 36910167
[TBL] [Abstract][Full Text] [Related]
5. Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes.
Mori H; Maruyama F; Kato H; Toyoda A; Dozono A; Ohtsubo Y; Nagata Y; Fujiyama A; Tsuda M; Kurokawa K
DNA Res; 2014; 21(2):217-27. PubMed ID: 24277737
[TBL] [Abstract][Full Text] [Related]
6. Merging and concatenation of sequencing reads: a bioinformatics workflow for the comprehensive profiling of microbiome from amplicon data.
Ramakodi MP
FEMS Microbiol Lett; 2024 Jan; 371():. PubMed ID: 38305133
[TBL] [Abstract][Full Text] [Related]
7. Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys.
Walters W; Hyde ER; Berg-Lyons D; Ackermann G; Humphrey G; Parada A; Gilbert JA; Jansson JK; Caporaso JG; Fuhrman JA; Apprill A; Knight R
mSystems; 2016; 1(1):. PubMed ID: 27822518
[TBL] [Abstract][Full Text] [Related]
8. Comparison of Two 16S rRNA Primers (V3-V4 and V4-V5) for Studies of Arctic Microbial Communities.
Fadeev E; Cardozo-Mino MG; Rapp JZ; Bienhold C; Salter I; Salman-Carvalho V; Molari M; Tegetmeyer HE; Buttigieg PL; Boetius A
Front Microbiol; 2021; 12():637526. PubMed ID: 33664723
[TBL] [Abstract][Full Text] [Related]
9. Short- and long-read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing.
Latz MAC; Grujcic V; Brugel S; Lycken J; John U; Karlson B; Andersson A; Andersson AF
Mol Ecol Resour; 2022 Aug; 22(6):2304-2318. PubMed ID: 35437888
[TBL] [Abstract][Full Text] [Related]
10. Composition and Biogeography of Planktonic Pro- and Eukaryotic Communities in the Atlantic Ocean: Primer Choice Matters.
Milke F; Sanchez-Garcia S; Dlugosch L; McNichol J; Fuhrman J; Simon M; Wagner-Döbler I
Front Microbiol; 2022; 13():895875. PubMed ID: 35836413
[TBL] [Abstract][Full Text] [Related]
11. MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
Zou B; Li J; Zhou Q; Quan ZX
PLoS One; 2017; 12(3):e0174609. PubMed ID: 28350876
[TBL] [Abstract][Full Text] [Related]
12. In silico evaluation and selection of the best 16S rRNA gene primers for use in next-generation sequencing to detect oral bacteria and archaea.
Regueira-Iglesias A; Vázquez-González L; Balsa-Castro C; Vila-Blanco N; Blanco-Pintos T; Tamames J; Carreira MJ; Tomás I
Microbiome; 2023 Mar; 11(1):58. PubMed ID: 36949474
[TBL] [Abstract][Full Text] [Related]
13. Design of targeted primers based on 16S rRNA sequences in meta-transcriptomic datasets and identification of a novel taxonomic group in the Asgard archaea.
Zhang RY; Zou B; Yan YW; Jeon CO; Li M; Cai M; Quan ZX
BMC Microbiol; 2020 Feb; 20(1):25. PubMed ID: 32013868
[TBL] [Abstract][Full Text] [Related]
14. Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes.
Guo J; Cole JR; Zhang Q; Brown CT; Tiedje JM
Appl Environ Microbiol; 2016 Jan; 82(1):157-66. PubMed ID: 26475107
[TBL] [Abstract][Full Text] [Related]
15. Impact of 16S rRNA Gene Redundancy and Primer Pair Selection on the Quantification and Classification of Oral Microbiota in Next-Generation Sequencing.
Regueira-Iglesias A; Vázquez-González L; Balsa-Castro C; Blanco-Pintos T; Vila-Blanco N; Carreira MJ; Tomás I
Microbiol Spectr; 2023 Feb; 11(2):e0439822. PubMed ID: 36779795
[TBL] [Abstract][Full Text] [Related]
16. A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms.
Banos S; Lentendu G; Kopf A; Wubet T; Glöckner FO; Reich M
BMC Microbiol; 2018 Nov; 18(1):190. PubMed ID: 30458701
[TBL] [Abstract][Full Text] [Related]
17. pr2-primers: An 18S rRNA primer database for protists.
Vaulot D; Geisen S; Mahé F; Bass D
Mol Ecol Resour; 2022 Jan; 22(1):168-179. PubMed ID: 34251760
[TBL] [Abstract][Full Text] [Related]
18. Evaluation of 16S rRNA Gene Primer Pairs for Monitoring Microbial Community Structures Showed High Reproducibility within and Low Comparability between Datasets Generated with Multiple Archaeal and Bacterial Primer Pairs.
Fischer MA; Güllert S; Neulinger SC; Streit WR; Schmitz RA
Front Microbiol; 2016; 7():1297. PubMed ID: 27602022
[TBL] [Abstract][Full Text] [Related]
19. CaptureSeq: Hybridization-Based Enrichment of
Links MG; Dumonceaux TJ; McCarthy EL; Hemmingsen SM; Topp E; Town JR
Microorganisms; 2021 Apr; 9(4):. PubMed ID: 33924343
[TBL] [Abstract][Full Text] [Related]
20. Development of a prokaryotic universal primer for simultaneous analysis of Bacteria and Archaea using next-generation sequencing.
Takahashi S; Tomita J; Nishioka K; Hisada T; Nishijima M
PLoS One; 2014; 9(8):e105592. PubMed ID: 25144201
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
