These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

221 related articles for article (PubMed ID: 34071577)

  • 1. OCRDetector: Accurately Detecting Open Chromatin Regions via Plasma Cell-Free DNA Sequencing Data.
    Wang J; Chen L; Zhang X; Tong Y; Zheng T
    Int J Mol Sci; 2021 May; 22(11):. PubMed ID: 34071577
    [TBL] [Abstract][Full Text] [Related]  

  • 2. OCRFinder: a noise-tolerance machine learning method for accurately estimating open chromatin regions.
    Ren J; Liu Y; Zhu X; Wang X; Li Y; Liu Y; Hu W; Zhang X; Wang J
    Front Genet; 2023; 14():1184744. PubMed ID: 37323658
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Comprehensive DNA methylation analysis of tissue of origin of plasma cell-free DNA by methylated CpG tandem amplification and sequencing (MCTA-Seq).
    Liu X; Ren J; Luo N; Guo H; Zheng Y; Li J; Tang F; Wen L; Peng J
    Clin Epigenetics; 2019 Jun; 11(1):93. PubMed ID: 31234922
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Genomic Features of Open Chromatin Regions (OCRs) in Wild Soybean and Their Effects on Gene Expressions.
    Huang MK; Zhang L; Zhou LM; Yung WS; Li MW; Lam HM
    Genes (Basel); 2021 Apr; 12(5):. PubMed ID: 33923056
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
    Orchard P; Kyono Y; Hensley J; Kitzman JO; Parker SCJ
    Cell Syst; 2020 Mar; 10(3):298-306.e4. PubMed ID: 32213349
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Interrogating the Accessible Chromatin Landscape of Eukaryote Genomes Using ATAC-seq.
    Marinov GK; Shipony Z
    Methods Mol Biol; 2021; 2243():183-226. PubMed ID: 33606259
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CharPlant: A De Novo Open Chromatin Region Prediction Tool for Plant Genomes.
    Shen Y; Chen LL; Gao J
    Genomics Proteomics Bioinformatics; 2021 Oct; 19(5):860-871. PubMed ID: 33662624
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Orientation-aware plasma cell-free DNA fragmentation analysis in open chromatin regions informs tissue of origin.
    Sun K; Jiang P; Cheng SH; Cheng THT; Wong J; Wong VWS; Ng SSM; Ma BBY; Leung TY; Chan SL; Mok TSK; Lai PBS; Chan HLY; Sun H; Chan KCA; Chiu RWK; Lo YMD
    Genome Res; 2019 Mar; 29(3):418-427. PubMed ID: 30808726
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Optimization of ATAC-seq in wheat seedling roots using INTACT-isolated nuclei.
    Debernardi JM; Burguener G; Bubb K; Liu Q; Queitsch C; Dubcovsky J
    BMC Plant Biol; 2023 May; 23(1):270. PubMed ID: 37211599
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comparison of differential accessibility analysis strategies for ATAC-seq data.
    Gontarz P; Fu S; Xing X; Liu S; Miao B; Bazylianska V; Sharma A; Madden P; Cates K; Yoo A; Moszczynska A; Wang T; Zhang B
    Sci Rep; 2020 Jun; 10(1):10150. PubMed ID: 32576878
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genome-Wide Identification of Regulatory DNA Elements in Crop Plants.
    Li Z; Wang K
    Methods Mol Biol; 2020; 2072():85-99. PubMed ID: 31541440
    [TBL] [Abstract][Full Text] [Related]  

  • 12. [Advances in assay for transposase-accessible chromatin with high-throughput sequencing].
    Wu J; Quan JP; Ye Y; Wu ZF; Yang J; Yang M; Zheng EQ
    Yi Chuan; 2020 Apr; 42(4):333-346. PubMed ID: 32312702
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis.
    Qiu X; Feit AS; Feiglin A; Xie Y; Kesten N; Taing L; Perkins J; Gu S; Li Y; Cejas P; Zhou N; Jeselsohn R; Brown M; Shirley Liu X; Long HW
    Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):652-661. PubMed ID: 34284136
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Discovering single nucleotide variants and indels from bulk and single-cell ATAC-seq.
    Massarat AR; Sen A; Jaureguy J; Tyndale ST; Fu Y; Erikson G; McVicker G
    Nucleic Acids Res; 2021 Aug; 49(14):7986-7994. PubMed ID: 34313779
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Visualization of the landscape of the read alignment shape of ATAC-seq data using Hellinger distance metric.
    Cheng JH; Zheng C; Yamada R; Okada D
    Genes Cells; 2024 Jan; 29(1):5-16. PubMed ID: 37989133
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Nuclease deficiencies alter plasma cell-free DNA methylation profiles.
    Han DSC; Ni M; Chan RWY; Wong DKL; Hiraki LT; Volpi S; Jiang P; Lui KO; Chan KCA; Chiu RWK; Lo YMD
    Genome Res; 2021 Nov; 31(11):2008-2021. PubMed ID: 34470801
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies.
    Bera BS; Thompson TV; Sosa E; Nomaru H; Reynolds D; Dubin RA; Maqbool SB; Zheng D; Morrow BE; Greally JM; Suzuki M
    Epigenetics Chromatin; 2023 Apr; 16(1):14. PubMed ID: 37118773
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Genome-Wide Mapping of Active Regulatory Elements Using ATAC-seq.
    Marinov GK; Shipony Z; Kundaje A; Greenleaf WJ
    Methods Mol Biol; 2023; 2611():3-19. PubMed ID: 36807060
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Synergism of open chromatin regions involved in regulating genes in Bombyx mori.
    Zhang Q; Cheng T; Sun Y; Wang Y; Feng T; Li X; Liu L; Li Z; Liu C; Xia Q; He H
    Insect Biochem Mol Biol; 2019 Jul; 110():10-18. PubMed ID: 31004794
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome-Scale Analysis of Cell-Specific Regulatory Codes Using Nuclear Enzymes.
    Baek S; Sung MH
    Methods Mol Biol; 2016; 1418():225-40. PubMed ID: 27008018
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.