233 related articles for article (PubMed ID: 34071577)
21. ATAC2GRN: optimized ATAC-seq and DNase1-seq pipelines for rapid and accurate genome regulatory network inference.
Pranzatelli TJF; Michael DG; Chiorini JA
BMC Genomics; 2018 Jul; 19(1):563. PubMed ID: 30064353
[TBL] [Abstract][Full Text] [Related]
22. XL-DNase-seq: improved footprinting of dynamic transcription factors.
Oh KS; Ha J; Baek S; Sung MH
Epigenetics Chromatin; 2019 Jun; 12(1):30. PubMed ID: 31164146
[TBL] [Abstract][Full Text] [Related]
23. Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq.
Grbesa I; Tannenbaum M; Sarusi-Portuguez A; Schwartz M; Hakim O
J Vis Exp; 2017 Nov; (129):. PubMed ID: 29155775
[TBL] [Abstract][Full Text] [Related]
24. Global prediction of chromatin accessibility using small-cell-number and single-cell RNA-seq.
Zhou W; Ji Z; Fang W; Ji H
Nucleic Acids Res; 2019 Nov; 47(19):e121. PubMed ID: 31428792
[TBL] [Abstract][Full Text] [Related]
25. Defining Regulatory Elements in the Human Genome Using Nucleosome Occupancy and Methylome Sequencing (NOMe-Seq).
Rhie SK; Schreiner S; Farnham PJ
Methods Mol Biol; 2018; 1766():209-229. PubMed ID: 29605855
[TBL] [Abstract][Full Text] [Related]
26. Unified Analysis of Multiple ChIP-Seq Datasets.
Ma G; Babarinde IA; Zhuang Q; Hutchins AP
Methods Mol Biol; 2021; 2198():451-465. PubMed ID: 32822050
[TBL] [Abstract][Full Text] [Related]
27. Identification of Genomic Alterations Through Multilevel DNA Structural Analysis.
Shultzaberger RK; Dresios J
Methods Mol Biol; 2019; 1896():191-201. PubMed ID: 30474849
[TBL] [Abstract][Full Text] [Related]
28. Profiling Open Chromatin Structure in theĀ Ovarian Somatic Cells Using ATAC-seq.
Murano K; Iwasaki YW; Siomi H
Methods Mol Biol; 2018; 1680():165-177. PubMed ID: 29030848
[TBL] [Abstract][Full Text] [Related]
29. ATAC-seq Data Processing.
Kim DS
Methods Mol Biol; 2023; 2611():305-323. PubMed ID: 36807076
[TBL] [Abstract][Full Text] [Related]
30. methyl-ATAC-seq measures DNA methylation at accessible chromatin.
Spektor R; Tippens ND; Mimoso CA; Soloway PD
Genome Res; 2019 Jun; 29(6):969-977. PubMed ID: 31160376
[TBL] [Abstract][Full Text] [Related]
31. Finding new cancer epigenetic and genetic biomarkers from cell-free DNA by combining SALP-seq and machine learning.
Liu S; Wu J; Xia Q; Liu H; Li W; Xia X; Wang J
Comput Struct Biotechnol J; 2020; 18():1891-1903. PubMed ID: 32774784
[TBL] [Abstract][Full Text] [Related]
32. Correcting nucleotide-specific biases in high-throughput sequencing data.
Wang JR; Quach B; Furey TS
BMC Bioinformatics; 2017 Aug; 18(1):357. PubMed ID: 28764645
[TBL] [Abstract][Full Text] [Related]
33. Assessing Chromatin Accessibility During WBR in Acoels.
Gehrke AR; Srivastava M
Methods Mol Biol; 2022; 2450():549-561. PubMed ID: 35359328
[TBL] [Abstract][Full Text] [Related]
34. Prenet: Predictive network from ATAC-SEQ data.
Salehin N; Tam PPL; Osteil P
J Bioinform Comput Biol; 2020 Feb; 18(1):2040003. PubMed ID: 32336246
[TBL] [Abstract][Full Text] [Related]
35. A neural network based model effectively predicts enhancers from clinical ATAC-seq samples.
Thibodeau A; Uyar A; Khetan S; Stitzel ML; Ucar D
Sci Rep; 2018 Oct; 8(1):16048. PubMed ID: 30375457
[TBL] [Abstract][Full Text] [Related]
36. Fast alignment and preprocessing of chromatin profiles with Chromap.
Zhang H; Song L; Wang X; Cheng H; Wang C; Meyer CA; Liu T; Tang M; Aluru S; Yue F; Liu XS; Li H
Nat Commun; 2021 Nov; 12(1):6566. PubMed ID: 34772935
[TBL] [Abstract][Full Text] [Related]
37. Identification of Open Chromatin Regions in Plant Genomes Using ATAC-Seq.
Bajic M; Maher KA; Deal RB
Methods Mol Biol; 2018; 1675():183-201. PubMed ID: 29052193
[TBL] [Abstract][Full Text] [Related]
38. Preparation of cfMeDIP-seq libraries for methylome profiling of plasma cell-free DNA.
Shen SY; Burgener JM; Bratman SV; De Carvalho DD
Nat Protoc; 2019 Oct; 14(10):2749-2780. PubMed ID: 31471598
[TBL] [Abstract][Full Text] [Related]
39. DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads.
Li J; Wei L; Zhang X; Zhang W; Wang H; Zhong B; Xie Z; Lv H; Wang X
Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34245239
[TBL] [Abstract][Full Text] [Related]
40. The chromatin accessibility landscape of pistils and anthers in rice.
Wang G; Li X; Shen W; Li MW; Huang M; Zhang J; Li H
Plant Physiol; 2022 Nov; 190(4):2797-2811. PubMed ID: 36149297
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]