384 related articles for article (PubMed ID: 34074028)
21. Deep Learning-Based Advances In Protein Posttranslational Modification Site and Protein Cleavage Prediction.
Pakhrin SC; Pokharel S; Saigo H; Kc DB
Methods Mol Biol; 2022; 2499():285-322. PubMed ID: 35696087
[TBL] [Abstract][Full Text] [Related]
22. Improved Protein Real-Valued Distance Prediction Using Deep Residual Dense Network (DRDN).
Geethu S; Vimina ER
Protein J; 2022 Oct; 41(4-5):468-476. PubMed ID: 36008645
[TBL] [Abstract][Full Text] [Related]
23. Accurate Prediction of Protein Structural Flexibility by Deep Learning Integrating Intricate Atomic Structures and Cryo-EM Density Information.
Song X; Bao L; Feng C; Huang Q; Zhang F; Gao X; Han R
Nat Commun; 2024 Jul; 15(1):5538. PubMed ID: 38956032
[TBL] [Abstract][Full Text] [Related]
24. Protein Structure Prediction: Conventional and Deep Learning Perspectives.
Jisna VA; Jayaraj PB
Protein J; 2021 Aug; 40(4):522-544. PubMed ID: 34050498
[TBL] [Abstract][Full Text] [Related]
25. Target highlights in CASP14: Analysis of models by structure providers.
Alexander LT; Lepore R; Kryshtafovych A; Adamopoulos A; Alahuhta M; Arvin AM; Bomble YJ; Böttcher B; Breyton C; Chiarini V; Chinnam NB; Chiu W; Fidelis K; Grinter R; Gupta GD; Hartmann MD; Hayes CS; Heidebrecht T; Ilari A; Joachimiak A; Kim Y; Linares R; Lovering AL; Lunin VV; Lupas AN; Makbul C; Michalska K; Moult J; Mukherjee PK; Nutt WS; Oliver SL; Perrakis A; Stols L; Tainer JA; Topf M; Tsutakawa SE; Valdivia-Delgado M; Schwede T
Proteins; 2021 Dec; 89(12):1647-1672. PubMed ID: 34561912
[TBL] [Abstract][Full Text] [Related]
26. iQDeep: an integrated web server for protein scoring using multiscale deep learning models.
Shuvo MH; Karim M; Bhattacharya D
J Mol Biol; 2023 Jul; 435(14):168057. PubMed ID: 37356909
[TBL] [Abstract][Full Text] [Related]
27. Protein structure prediction by AlphaFold2: are attention and symmetries all you need?
Bouatta N; Sorger P; AlQuraishi M
Acta Crystallogr D Struct Biol; 2021 Aug; 77(Pt 8):982-991. PubMed ID: 34342271
[TBL] [Abstract][Full Text] [Related]
28. Recent Applications of Deep Learning Methods on Evolution- and Contact-Based Protein Structure Prediction.
Suh D; Lee JW; Choi S; Lee Y
Int J Mol Sci; 2021 Jun; 22(11):. PubMed ID: 34199677
[TBL] [Abstract][Full Text] [Related]
29. Improving protein tertiary structure prediction by deep learning and distance prediction in CASP14.
Liu J; Wu T; Guo Z; Hou J; Cheng J
Proteins; 2022 Jan; 90(1):58-72. PubMed ID: 34291486
[TBL] [Abstract][Full Text] [Related]
30. Protein structure prediction using deep learning distance and hydrogen-bonding restraints in CASP14.
Zheng W; Li Y; Zhang C; Zhou X; Pearce R; Bell EW; Huang X; Zhang Y
Proteins; 2021 Dec; 89(12):1734-1751. PubMed ID: 34331351
[TBL] [Abstract][Full Text] [Related]
31. Deep-learning contact-map guided protein structure prediction in CASP13.
Zheng W; Li Y; Zhang C; Pearce R; Mortuza SM; Zhang Y
Proteins; 2019 Dec; 87(12):1149-1164. PubMed ID: 31365149
[TBL] [Abstract][Full Text] [Related]
32. High-accuracy protein structure prediction in CASP14.
Pereira J; Simpkin AJ; Hartmann MD; Rigden DJ; Keegan RM; Lupas AN
Proteins; 2021 Dec; 89(12):1687-1699. PubMed ID: 34218458
[TBL] [Abstract][Full Text] [Related]
33. The breakthrough in protein structure prediction.
Lupas AN; Pereira J; Alva V; Merino F; Coles M; Hartmann MD
Biochem J; 2021 May; 478(10):1885-1890. PubMed ID: 34029366
[TBL] [Abstract][Full Text] [Related]
34. Protein secondary structure detection in intermediate-resolution cryo-EM maps using deep learning.
Maddhuri Venkata Subramaniya SR; Terashi G; Kihara D
Nat Methods; 2019 Sep; 16(9):911-917. PubMed ID: 31358979
[TBL] [Abstract][Full Text] [Related]
35. Assessment of the CASP14 assembly predictions.
Ozden B; Kryshtafovych A; Karaca E
Proteins; 2021 Dec; 89(12):1787-1799. PubMed ID: 34337786
[TBL] [Abstract][Full Text] [Related]
36. Improving protein fold recognition using triplet network and ensemble deep learning.
Liu Y; Han K; Zhu YH; Zhang Y; Shen LC; Song J; Yu DJ
Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34226918
[TBL] [Abstract][Full Text] [Related]
37. Ensembling multiple raw coevolutionary features with deep residual neural networks for contact-map prediction in CASP13.
Li Y; Zhang C; Bell EW; Yu DJ; Zhang Y
Proteins; 2019 Dec; 87(12):1082-1091. PubMed ID: 31407406
[TBL] [Abstract][Full Text] [Related]
38. Improving protein structure prediction with extended sequence similarity searches and deep-learning-based refinement in CASP15.
Oda T
Proteins; 2023 Dec; 91(12):1712-1723. PubMed ID: 37485822
[TBL] [Abstract][Full Text] [Related]
39. Decoding the link of microbiome niches with homologous sequences enables accurately targeted protein structure prediction.
Yang P; Zheng W; Ning K; Zhang Y
Proc Natl Acad Sci U S A; 2021 Dec; 118(49):. PubMed ID: 34873061
[TBL] [Abstract][Full Text] [Related]
40. I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction.
Zhou X; Zheng W; Li Y; Pearce R; Zhang C; Bell EW; Zhang G; Zhang Y
Nat Protoc; 2022 Oct; 17(10):2326-2353. PubMed ID: 35931779
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]