193 related articles for article (PubMed ID: 34085037)
1. pyrpipe: a Python package for RNA-Seq workflows.
Singh U; Li J; Seetharam A; Wurtele ES
NAR Genom Bioinform; 2021 Jun; 3(2):lqab049. PubMed ID: 34085037
[TBL] [Abstract][Full Text] [Related]
2. Pygenprop: a Python library for programmatic exploration and comparison of organism genome properties.
Bergstrand LH; Neufeld JD; Doxey AC
Bioinformatics; 2019 Dec; 35(23):5063-5065. PubMed ID: 31240307
[TBL] [Abstract][Full Text] [Related]
3. PyHMMER: a Python library binding to HMMER for efficient sequence analysis.
Larralde M; Zeller G
Bioinformatics; 2023 May; 39(5):. PubMed ID: 37074928
[TBL] [Abstract][Full Text] [Related]
4. PxBLAT: An efficient python binding library for BLAT.
Li Y; Yang R
bioRxiv; 2024 Feb; ():. PubMed ID: 37577677
[TBL] [Abstract][Full Text] [Related]
5. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines.
Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K
Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662
[TBL] [Abstract][Full Text] [Related]
6. orfipy: a fast and flexible tool for extracting ORFs.
Singh U; Wurtele ES
Bioinformatics; 2021 Sep; 37(18):3019-3020. PubMed ID: 33576786
[TBL] [Abstract][Full Text] [Related]
7. plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style.
Cao T; Li Q; Huang Y; Li A
BMC Genomics; 2023 Oct; 24(1):585. PubMed ID: 37789265
[TBL] [Abstract][Full Text] [Related]
8. Utility of the Python package Geoweaver_cwl for improving workflow reusability: an illustration with multidisciplinary use cases.
Kale A; Sun Z; Ma X
Earth Sci Inform; 2023; 16(3):2955-2961. PubMed ID: 37636584
[TBL] [Abstract][Full Text] [Related]
9. GSEApy: a comprehensive package for performing gene set enrichment analysis in Python.
Fang Z; Liu X; Peltz G
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36426870
[TBL] [Abstract][Full Text] [Related]
10. pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods.
Behdenna A; Colange M; Haziza J; Gema A; Appé G; Azencott CA; Nordor A
BMC Bioinformatics; 2023 Dec; 24(1):459. PubMed ID: 38057718
[TBL] [Abstract][Full Text] [Related]
11. easyPheno: An easy-to-use and easy-to-extend Python framework for phenotype prediction using Bayesian optimization.
Haselbeck F; John M; Grimm DG
Bioinform Adv; 2023; 3(1):vbad035. PubMed ID: 37066135
[TBL] [Abstract][Full Text] [Related]
12. danRerLib: a Python package for zebrafish transcriptomics.
Schwartz AV; Sant KE; George UZ
Bioinform Adv; 2024; 4(1):vbae065. PubMed ID: 38770229
[TBL] [Abstract][Full Text] [Related]
13. High-performance pipeline for MutMap and QTL-seq.
Sugihara Y; Young L; Yaegashi H; Natsume S; Shea DJ; Takagi H; Booker H; Innan H; Terauchi R; Abe A
PeerJ; 2022; 10():e13170. PubMed ID: 35321412
[TBL] [Abstract][Full Text] [Related]
14. Trackplot: A flexible toolkit for combinatorial analysis of genomic data.
Zhang Y; Zhou R; Liu L; Chen L; Wang Y
PLoS Comput Biol; 2023 Sep; 19(9):e1011477. PubMed ID: 37669275
[TBL] [Abstract][Full Text] [Related]
15. LOCAN: a python library for analyzing single-molecule localization microscopy data.
Doose S
Bioinformatics; 2022 Apr; 38(9):2670-2672. PubMed ID: 35298593
[TBL] [Abstract][Full Text] [Related]
16. snakePipes: facilitating flexible, scalable and integrative epigenomic analysis.
Bhardwaj V; Heyne S; Sikora K; Rabbani L; Rauer M; Kilpert F; Richter AS; Ryan DP; Manke T
Bioinformatics; 2019 Nov; 35(22):4757-4759. PubMed ID: 31134269
[TBL] [Abstract][Full Text] [Related]
17. Efficient population-scale variant analysis and prioritization with VAPr.
Birmingham A; Mark AM; Mazzaferro C; Xu G; Fisch KM
Bioinformatics; 2018 Aug; 34(16):2843-2845. PubMed ID: 29659724
[TBL] [Abstract][Full Text] [Related]
18. Gos: a declarative library for interactive genomics visualization in Python.
Manz T; L'Yi S; Gehlenborg N
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36688709
[TBL] [Abstract][Full Text] [Related]
19. Cellsnake: a user-friendly tool for single-cell RNA sequencing analysis.
Umu SU; Rapp Vander-Elst K; Karlsen VT; Chouliara M; Bækkevold ES; Jahnsen FL; Domanska D
Gigascience; 2022 Dec; 12():. PubMed ID: 37889009
[TBL] [Abstract][Full Text] [Related]
20. The nPYc-Toolbox, a Python module for the pre-processing, quality-control and analysis of metabolic profiling datasets.
Sands CJ; Wolfer AM; Correia GDS; Sadawi N; Ahmed A; Jiménez B; Lewis MR; Glen RC; Nicholson JK; Pearce JTM
Bioinformatics; 2019 Dec; 35(24):5359-5360. PubMed ID: 31350543
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]