211 related articles for article (PubMed ID: 34085862)
1. A Quantitative Metagenomic Sequencing Approach for High-Throughput Gene Quantification and Demonstration with Antibiotic Resistance Genes.
Li B; Li X; Yan T
Appl Environ Microbiol; 2021 Jul; 87(16):e0087121. PubMed ID: 34085862
[TBL] [Abstract][Full Text] [Related]
2. A Metagenomic Approach for Characterizing Antibiotic Resistance Genes in Specific Bacterial Populations: Demonstration with Escherichia coli in Cattle Manure.
Li B; Li X; Wang B; Yan T
Appl Environ Microbiol; 2022 Apr; 88(7):e0255421. PubMed ID: 35285243
[TBL] [Abstract][Full Text] [Related]
3. Metagenomic Quantification of Genes with Internal Standards.
Crossette E; Gumm J; Langenfeld K; Raskin L; Duhaime M; Wigginton K
mBio; 2021 Feb; 12(1):. PubMed ID: 33531401
[TBL] [Abstract][Full Text] [Related]
4. Metagenomic next generation sequencing for studying antibiotic resistance genes in the environment.
Li B; Yan T
Adv Appl Microbiol; 2023; 123():41-89. PubMed ID: 37400174
[TBL] [Abstract][Full Text] [Related]
5. Performance Characteristics of Next-Generation Sequencing for the Detection of Antimicrobial Resistance Determinants in Escherichia coli Genomes and Metagenomes.
Rooney AM; Raphenya AR; Melano RG; Seah C; Yee NR; MacFadden DR; McArthur AG; Schneeberger PHH; Coburn B
mSystems; 2022 Jun; 7(3):e0002222. PubMed ID: 35642524
[TBL] [Abstract][Full Text] [Related]
6. Application of Stochastic Labeling with Random-Sequence Barcodes for Simultaneous Quantification and Sequencing of Environmental 16S rRNA Genes.
Hoshino T; Inagaki F
PLoS One; 2017; 12(1):e0169431. PubMed ID: 28052139
[TBL] [Abstract][Full Text] [Related]
7. Comparison of quality/quantity mNGS and usual mNGS for pathogen detection in suspected pulmonary infections.
Zhao Z; Chen X; Wang Y; Feng J
Front Cell Infect Microbiol; 2023; 13():1184245. PubMed ID: 37588054
[TBL] [Abstract][Full Text] [Related]
8. The impacts of different high-throughput profiling approaches on the understanding of bacterial antibiotic resistance genes in a freshwater reservoir.
Liu X; Xiao P; Guo Y; Liu L; Yang J
Sci Total Environ; 2019 Nov; 693():133585. PubMed ID: 31377359
[TBL] [Abstract][Full Text] [Related]
9. Comparative study of sequence aligners for detecting antibiotic resistance in bacterial metagenomes.
McCall C; Xagoraraki I
Lett Appl Microbiol; 2018 Mar; 66(3):162-168. PubMed ID: 29288551
[TBL] [Abstract][Full Text] [Related]
10. Next generation sequencing reveals limitation of qPCR methods in quantifying emerging antibiotic resistance genes (ARGs) in the environment.
Li B; Yan T
Appl Microbiol Biotechnol; 2021 Apr; 105(7):2925-2936. PubMed ID: 33738553
[TBL] [Abstract][Full Text] [Related]
11. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.
Kang JB; Siranosian BA; Moss EL; Banaei N; Andermann TM; Bhatt AS
BMC Bioinformatics; 2019 Dec; 20(Suppl 16):585. PubMed ID: 31787070
[TBL] [Abstract][Full Text] [Related]
12. Higher Temperatures Do Not Always Achieve Better Antibiotic Resistance Gene Removal in Anaerobic Digestion of Swine Manure.
Huang X; Zheng J; Tian S; Liu C; Liu L; Wei L; Fan H; Zhang T; Wang L; Zhu G; Xu K
Appl Environ Microbiol; 2019 Apr; 85(7):. PubMed ID: 30683745
[TBL] [Abstract][Full Text] [Related]
13. QMRA of beach water by Nanopore sequencing-based viability-metagenomics absolute quantification.
Yang Y; Deng Y; Shi X; Liu L; Yin X; Zhao W; Li S; Yang C; Zhang T
Water Res; 2023 May; 235():119858. PubMed ID: 36931186
[TBL] [Abstract][Full Text] [Related]
14. InteMAP: Integrated metagenomic assembly pipeline for NGS short reads.
Lai B; Wang F; Wang X; Duan L; Zhu H
BMC Bioinformatics; 2015 Aug; 16():244. PubMed ID: 26250558
[TBL] [Abstract][Full Text] [Related]
15. Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil.
Sukhum KV; Vargas RC; Boolchandani M; D'Souza AW; Patel S; Kesaraju A; Walljasper G; Hegde H; Ye Z; Valenzuela RK; Gunderson P; Bendixsen C; Dantas G; Shukla SK
mBio; 2021 May; 12(3):. PubMed ID: 33975936
[TBL] [Abstract][Full Text] [Related]
16. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
17. Metagenomics as a Public Health Risk Assessment Tool in a Study of Natural Creek Sediments Influenced by Agricultural and Livestock Runoff: Potential and Limitations.
Suttner B; Johnston ER; Orellana LH; Rodriguez-R LM; Hatt JK; Carychao D; Carter MQ; Cooley MB; Konstantinidis KT
Appl Environ Microbiol; 2020 Mar; 86(6):. PubMed ID: 31924621
[TBL] [Abstract][Full Text] [Related]
18. Development of a genus-specific next generation sequencing approach for sensitive and quantitative determination of the Legionella microbiome in freshwater systems.
Pereira RP; Peplies J; Brettar I; Höfle MG
BMC Microbiol; 2017 Mar; 17(1):79. PubMed ID: 28359254
[TBL] [Abstract][Full Text] [Related]
19. A rapid bacterial pathogen and antimicrobial resistance diagnosis workflow using Oxford nanopore adaptive sequencing method.
Cheng H; Sun Y; Yang Q; Deng M; Yu Z; Zhu G; Qu J; Liu L; Yang L; Xia Y
Brief Bioinform; 2022 Nov; 23(6):. PubMed ID: 36259361
[TBL] [Abstract][Full Text] [Related]
20. Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes.
Wang C; Dong D; Strong PJ; Zhu W; Ma Z; Qin Y; Wu W
Microbiome; 2017 Aug; 5(1):103. PubMed ID: 28814344
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]