159 related articles for article (PubMed ID: 34090324)
1. Reproducible and accessible analysis of transposon insertion sequencing in Galaxy for qualitative essentiality analyses.
Larivière D; Wickham L; Keiler K; Nekrutenko A;
BMC Microbiol; 2021 Jun; 21(1):168. PubMed ID: 34090324
[TBL] [Abstract][Full Text] [Related]
2. Is amplification bias consequential in transposon sequencing (TnSeq) assays? A case study with a
Alkam D; Wongsurawat T; Nookaew I; Richardson AR; Ussery D; Smeltzer MS; Jenjaroenpun P
Microb Genom; 2021 Oct; 7(10):. PubMed ID: 34596508
[TBL] [Abstract][Full Text] [Related]
3. Unsupervised Learning Approach for Comparing Multiple Transposon Insertion Sequencing Studies.
Hubbard TP; D'Gama JD; Billings G; Davis BM; Waldor MK
mSphere; 2019 Feb; 4(1):. PubMed ID: 30787116
[TBL] [Abstract][Full Text] [Related]
4. Time-Resolved Transposon Insertion Sequencing Reveals Genome-Wide Fitness Dynamics during Infection.
Yang G; Billings G; Hubbard TP; Park JS; Yin Leung K; Liu Q; Davis BM; Zhang Y; Wang Q; Waldor MK
mBio; 2017 Oct; 8(5):. PubMed ID: 28974620
[TBL] [Abstract][Full Text] [Related]
5. Comprehensive Essentiality Analysis of the Mycobacterium tuberculosis Genome via Saturating Transposon Mutagenesis.
DeJesus MA; Gerrick ER; Xu W; Park SW; Long JE; Boutte CC; Rubin EJ; Schnappinger D; Ehrt S; Fortune SM; Sassetti CM; Ioerger TR
mBio; 2017 Jan; 8(1):. PubMed ID: 28096490
[TBL] [Abstract][Full Text] [Related]
6. Transposon Insertion Site Sequencing (TIS-Seq): An Efficient and High-Throughput Method for Determining Transposon Insertion Site(s) and Their Relative Abundances in a PiggyBac Transposon Mutant Pool by Next-Generation Sequencing.
Veeranagouda Y; Didier M
Curr Protoc Mol Biol; 2017 Oct; 120():21.35.1-21.35.11. PubMed ID: 28967994
[TBL] [Abstract][Full Text] [Related]
7. Transposon insertion site sequencing (TIS) of Pseudomonas aeruginosa.
Cho H
J Microbiol; 2021 Dec; 59(12):1067-1074. PubMed ID: 34865196
[TBL] [Abstract][Full Text] [Related]
8. TAPDANCE: an automated tool to identify and annotate transposon insertion CISs and associations between CISs from next generation sequence data.
Sarver AL; Erdman J; Starr T; Largaespada DA; Silverstein KA
BMC Bioinformatics; 2012 Jun; 13():154. PubMed ID: 22748055
[TBL] [Abstract][Full Text] [Related]
9. AlbaTraDIS: Comparative analysis of large datasets from parallel transposon mutagenesis experiments.
Page AJ; Bastkowski S; Yasir M; Turner AK; Le Viet T; Savva GM; Webber MA; Charles IG
PLoS Comput Biol; 2020 Jul; 16(7):e1007980. PubMed ID: 32678849
[TBL] [Abstract][Full Text] [Related]
10. The Nucleoid Binding Protein H-NS Biases Genome-Wide Transposon Insertion Landscapes.
Kimura S; Hubbard TP; Davis BM; Waldor MK
mBio; 2016 Aug; 7(4):. PubMed ID: 27578758
[TBL] [Abstract][Full Text] [Related]
11. ESSENTIALS: software for rapid analysis of high throughput transposon insertion sequencing data.
Zomer A; Burghout P; Bootsma HJ; Hermans PW; van Hijum SA
PLoS One; 2012; 7(8):e43012. PubMed ID: 22900082
[TBL] [Abstract][Full Text] [Related]
12. Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing.
Choe D; Kim U; Hwang S; Seo SW; Kim D; Cho S; Palsson B; Cho BK
mSystems; 2023 Feb; 8(1):e0089622. PubMed ID: 36507678
[TBL] [Abstract][Full Text] [Related]
13. Long-read sequencing for identification of insertion sites in large transposon mutant libraries.
Yasir M; Turner AK; Lott M; Rudder S; Baker D; Bastkowski S; Page AJ; Webber MA; Charles IG
Sci Rep; 2022 Mar; 12(1):3546. PubMed ID: 35241765
[TBL] [Abstract][Full Text] [Related]
14. Transposon Express, a software application to report the identity of insertions obtained by comprehensive transposon mutagenesis of sequenced genomes: analysis of the preference for in vitro Tn5 transposition into GC-rich DNA.
Herron PR; Hughes G; Chandra G; Fielding S; Dyson PJ
Nucleic Acids Res; 2004 Aug; 32(14):e113. PubMed ID: 15308758
[TBL] [Abstract][Full Text] [Related]
15. Transposon Insertion Site Sequencing for Synthetic Lethal Screening.
Yamaichi Y; Dörr T
Methods Mol Biol; 2017; 1624():39-49. PubMed ID: 28842874
[TBL] [Abstract][Full Text] [Related]
16. Analysis of Gene Essentiality from TnSeq Data Using Transit.
Ioerger TR
Methods Mol Biol; 2022; 2377():391-421. PubMed ID: 34709629
[TBL] [Abstract][Full Text] [Related]
17. Genome-wide sequence transposon insertion sites and analyze the essential genes of Brucella melitensis.
De Y; Dong C; Cao Y; Wang X; Yang X; Wang N; Zhang C; Wang Z; Lyu Y; Wu Q
Microb Pathog; 2017 Nov; 112():97-102. PubMed ID: 28888882
[TBL] [Abstract][Full Text] [Related]
18. Transposon Insertion Sequencing, a Global Measure of Gene Function.
van Opijnen T; Levin HL
Annu Rev Genet; 2020 Nov; 54():337-365. PubMed ID: 32886545
[TBL] [Abstract][Full Text] [Related]
19. Rapid quantification of mutant fitness in diverse bacteria by sequencing randomly bar-coded transposons.
Wetmore KM; Price MN; Waters RJ; Lamson JS; He J; Hoover CA; Blow MJ; Bristow J; Butland G; Arkin AP; Deutschbauer A
mBio; 2015 May; 6(3):e00306-15. PubMed ID: 25968644
[TBL] [Abstract][Full Text] [Related]
20. A decade of advances in transposon-insertion sequencing.
Cain AK; Barquist L; Goodman AL; Paulsen IT; Parkhill J; van Opijnen T
Nat Rev Genet; 2020 Sep; 21(9):526-540. PubMed ID: 32533119
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
