These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

337 related articles for article (PubMed ID: 34098864)

  • 1. WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates.
    Heikema AP; Jansen R; Hiltemann SD; Hays JP; Stubbs AP
    BMC Microbiol; 2021 Jun; 21(1):171. PubMed ID: 34098864
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing.
    Chen Z; Erickson DL; Meng J
    Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271875
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Recovery of small plasmid sequences via Oxford Nanopore sequencing.
    Wick RR; Judd LM; Wyres KL; Holt KE
    Microb Genom; 2021 Aug; 7(8):. PubMed ID: 34431763
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Oxford nanopore long-read sequencing enables the generation of complete bacterial and plasmid genomes without short-read sequencing.
    Zhao W; Zeng W; Pang B; Luo M; Peng Y; Xu J; Kan B; Li Z; Lu X
    Front Microbiol; 2023; 14():1179966. PubMed ID: 37256057
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The impact of applying various de novo assembly and correction tools on the identification of genome characterization, drug resistance, and virulence factors of clinical isolates using ONT sequencing.
    Safar HA; Alatar F; Nasser K; Al-Ajmi R; Alfouzan W; Mustafa AS
    BMC Biotechnol; 2023 Jul; 23(1):26. PubMed ID: 37525145
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.
    Cosma BM; Shirali Hossein Zade R; Jordan EN; van Lent P; Peng C; Pillay S; Abeel T
    Gigascience; 2022 Dec; 12():. PubMed ID: 38000912
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Rapid Nanopore Sequencing of Plasmids and Resistance Gene Detection in Clinical Isolates.
    Lemon JK; Khil PP; Frank KM; Dekker JP
    J Clin Microbiol; 2017 Dec; 55(12):3530-3543. PubMed ID: 29021151
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Tracking of Antibiotic Resistance Transfer and Rapid Plasmid Evolution in a Hospital Setting by Nanopore Sequencing.
    Peter S; Bosio M; Gross C; Bezdan D; Gutierrez J; Oberhettinger P; Liese J; Vogel W; Dörfel D; Berger L; Marschal M; Willmann M; Gut I; Gut M; Autenrieth I; Ossowski S
    mSphere; 2020 Aug; 5(4):. PubMed ID: 32817379
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Long read genome assemblers struggle with small plasmids.
    Johnson J; Soehnlen M; Blankenship HM
    Microb Genom; 2023 May; 9(5):. PubMed ID: 37224062
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
    Heikema AP; Horst-Kreft D; Boers SA; Jansen R; Hiltemann SD; de Koning W; Kraaij R; de Ridder MAJ; van Houten CB; Bont LJ; Stubbs AP; Hays JP
    Genes (Basel); 2020 Sep; 11(9):. PubMed ID: 32967250
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Resolving plasmid structures in
    George S; Pankhurst L; Hubbard A; Votintseva A; Stoesser N; Sheppard AE; Mathers A; Norris R; Navickaite I; Eaton C; Iqbal Z; Crook DW; Phan HTT
    Microb Genom; 2017 Aug; 3(8):e000118. PubMed ID: 29026658
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction.
    Murigneux V; Roberts LW; Forde BM; Phan MD; Nhu NTK; Irwin AD; Harris PNA; Paterson DL; Schembri MA; Whiley DM; Beatson SA
    BMC Genomics; 2021 Jun; 22(1):474. PubMed ID: 34172000
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Advancing metagenome-assembled genome-based pathogen identification: unraveling the power of long-read assembly algorithms in Oxford Nanopore sequencing.
    Chen Z; Grim CJ; Ramachandran P; Meng J
    Microbiol Spectr; 2024 Jun; 12(6):e0011724. PubMed ID: 38687063
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Complete hybrid genome assembly of clinical multidrug-resistant
    Sydenham TV; Overballe-Petersen S; Hasman H; Wexler H; Kemp M; Justesen US
    Microb Genom; 2019 Nov; 5(11):. PubMed ID: 31697231
    [No Abstract]   [Full Text] [Related]  

  • 15. Platon: identification and characterization of bacterial plasmid contigs in short-read draft assemblies exploiting protein sequence-based replicon distribution scores.
    Schwengers O; Barth P; Falgenhauer L; Hain T; Chakraborty T; Goesmann A
    Microb Genom; 2020 Oct; 6(10):. PubMed ID: 32579097
    [TBL] [Abstract][Full Text] [Related]  

  • 16. NanoARG: a web service for detecting and contextualizing antimicrobial resistance genes from nanopore-derived metagenomes.
    Arango-Argoty GA; Dai D; Pruden A; Vikesland P; Heath LS; Zhang L
    Microbiome; 2019 Jun; 7(1):88. PubMed ID: 31174603
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparison of bacterial genome assembly software for MinION data and their applicability to medical microbiology.
    Judge K; Hunt M; Reuter S; Tracey A; Quail MA; Parkhill J; Peacock SJ
    Microb Genom; 2016 Sep; 2(9):e000085. PubMed ID: 28348876
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.
    De Maio N; Shaw LP; Hubbard A; George S; Sanderson ND; Swann J; Wick R; AbuOun M; Stubberfield E; Hoosdally SJ; Crook DW; Peto TEA; Sheppard AE; Bailey MJ; Read DS; Anjum MF; Walker AS; Stoesser N; On Behalf Of The Rehab Consortium
    Microb Genom; 2019 Sep; 5(9):. PubMed ID: 31483244
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
    Goldstein S; Beka L; Graf J; Klassen JL
    BMC Genomics; 2019 Jan; 20(1):23. PubMed ID: 30626323
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Efficient generation of complete sequences of MDR-encoding plasmids by rapid assembly of MinION barcoding sequencing data.
    Li R; Xie M; Dong N; Lin D; Yang X; Wong MHY; Chan EW; Chen S
    Gigascience; 2018 Mar; 7(3):1-9. PubMed ID: 29325009
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.