200 related articles for article (PubMed ID: 34130621)
21. Benchmarking metagenomics classifiers on ancient viral DNA: a simulation study.
Arizmendi Cárdenas YO; Neuenschwander S; Malaspinas AS
PeerJ; 2022; 10():e12784. PubMed ID: 35356467
[TBL] [Abstract][Full Text] [Related]
22. Mini-Metagenomics and Nucleotide Composition Aid the Identification and Host Association of Novel Bacteriophage Sequences.
Deaton J; Yu FB; Quake SR
Adv Biosyst; 2019 Nov; 3(11):e1900108. PubMed ID: 32648690
[TBL] [Abstract][Full Text] [Related]
23. Genome binning of viral entities from bulk metagenomics data.
Johansen J; Plichta DR; Nissen JN; Jespersen ML; Shah SA; Deng L; Stokholm J; Bisgaard H; Nielsen DS; Sørensen SJ; Rasmussen S
Nat Commun; 2022 Feb; 13(1):965. PubMed ID: 35181661
[TBL] [Abstract][Full Text] [Related]
24. Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics.
Shi C; Beller L; Deboutte W; Yinda KC; Delang L; Vega-Rúa A; Failloux AB; Matthijnssens J
Microbiome; 2019 Aug; 7(1):121. PubMed ID: 31462331
[TBL] [Abstract][Full Text] [Related]
25. Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics.
Wu E; Mallawaarachchi V; Zhao J; Yang Y; Liu H; Wang X; Shen C; Lin Y; Qiao L
Microbiome; 2024 Mar; 12(1):58. PubMed ID: 38504332
[TBL] [Abstract][Full Text] [Related]
26. Freshwater viral metagenome reveals novel and functional phage-borne antibiotic resistance genes.
Moon K; Jeon JH; Kang I; Park KS; Lee K; Cha CJ; Lee SH; Cho JC
Microbiome; 2020 Jun; 8(1):75. PubMed ID: 32482165
[TBL] [Abstract][Full Text] [Related]
27. ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data.
Du Y; Fuhrman JA; Sun F
Nat Commun; 2023 Jan; 14(1):502. PubMed ID: 36720887
[TBL] [Abstract][Full Text] [Related]
28. Assembly and Annotation of Viral Metagenomes from Short-Read Sequencing Data.
Mangalea MR; Keift K; Duerkop BA; Anantharaman K
Methods Mol Biol; 2023; 2649():317-337. PubMed ID: 37258871
[TBL] [Abstract][Full Text] [Related]
29. From defaults to databases: parameter and database choice dramatically impact the performance of metagenomic taxonomic classification tools.
Wright RJ; Comeau AM; Langille MGI
Microb Genom; 2023 Mar; 9(3):. PubMed ID: 36867161
[TBL] [Abstract][Full Text] [Related]
30. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
31. Viruses as Winners in the Game of Life.
Cobián Güemes AG; Youle M; Cantú VA; Felts B; Nulton J; Rohwer F
Annu Rev Virol; 2016 Sep; 3(1):197-214. PubMed ID: 27741409
[TBL] [Abstract][Full Text] [Related]
32. Prediction of virus-host infectious association by supervised learning methods.
Zhang M; Yang L; Ren J; Ahlgren NA; Fuhrman JA; Sun F
BMC Bioinformatics; 2017 Mar; 18(Suppl 3):60. PubMed ID: 28361670
[TBL] [Abstract][Full Text] [Related]
33. Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.
Somerville V; Lutz S; Schmid M; Frei D; Moser A; Irmler S; Frey JE; Ahrens CH
BMC Microbiol; 2019 Jun; 19(1):143. PubMed ID: 31238873
[TBL] [Abstract][Full Text] [Related]
34. VIRify: An integrated detection, annotation and taxonomic classification pipeline using virus-specific protein profile hidden Markov models.
Rangel-Pineros G; Almeida A; Beracochea M; Sakharova E; Marz M; Reyes Muñoz A; Hölzer M; Finn RD
PLoS Comput Biol; 2023 Aug; 19(8):e1011422. PubMed ID: 37639475
[TBL] [Abstract][Full Text] [Related]
35. Thousands of previously unknown phages discovered in whole-community human gut metagenomes.
Benler S; Yutin N; Antipov D; Rayko M; Shmakov S; Gussow AB; Pevzner P; Koonin EV
Microbiome; 2021 Mar; 9(1):78. PubMed ID: 33781338
[TBL] [Abstract][Full Text] [Related]
36. Metagenomic assembly is the main bottleneck in the identification of mobile genetic elements.
Kerkvliet JJ; Bossers A; Kers JG; Meneses R; Willems R; Schürch AC
PeerJ; 2024; 12():e16695. PubMed ID: 38188174
[TBL] [Abstract][Full Text] [Related]
37. Metaviromics coupled with phage-host identification to open the viral 'black box'.
Moon K; Cho JC
J Microbiol; 2021 Mar; 59(3):311-323. PubMed ID: 33624268
[TBL] [Abstract][Full Text] [Related]
38. Viral Metagenomics Reveals Widely Diverse Viral Community of Freshwater Amazonian Lake.
Nogueira WG; Gois BVA; Pinheiro KDC; Aragão AO; Queiroz ALC; da Silva AL; Folador AC; Ramos RTJ
Front Public Health; 2022; 10():869886. PubMed ID: 35548089
[TBL] [Abstract][Full Text] [Related]
39. CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precision.
Herath D; Tang SL; Tandon K; Ackland D; Halgamuge SK
BMC Bioinformatics; 2017 Dec; 18(Suppl 16):571. PubMed ID: 29297295
[TBL] [Abstract][Full Text] [Related]
40. Computational approaches to predict bacteriophage-host relationships.
Edwards RA; McNair K; Faust K; Raes J; Dutilh BE
FEMS Microbiol Rev; 2016 Mar; 40(2):258-72. PubMed ID: 26657537
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
