BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

201 related articles for article (PubMed ID: 34145981)

  • 1. Bottom-up and top-down proteomic approaches for the identification, characterization, and quantification of the low molecular weight proteome with focus on short open reading frame-encoded peptides.
    Cassidy L; Kaulich PT; Maaß S; Bartel J; Becher D; Tholey A
    Proteomics; 2021 Dec; 21(23-24):e2100008. PubMed ID: 34145981
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Multidimensional separation schemes enhance the identification and molecular characterization of low molecular weight proteomes and short open reading frame-encoded peptides in top-down proteomics.
    Cassidy L; Helbig AO; Kaulich PT; Weidenbach K; Schmitz RA; Tholey A
    J Proteomics; 2021 Jan; 230():103988. PubMed ID: 32949814
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Multi-protease Approach for the Improved Identification and Molecular Characterization of Small Proteins and Short Open Reading Frame-Encoded Peptides.
    Kaulich PT; Cassidy L; Bartel J; Schmitz RA; Tholey A
    J Proteome Res; 2021 May; 20(5):2895-2903. PubMed ID: 33760615
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Proteomics-driven identification of short open reading frame-encoded peptides.
    Zhang Z; Li Y; Yuan W; Wang Z; Wan C
    Proteomics; 2022 Aug; 22(15-16):e2100312. PubMed ID: 35384297
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Combination of Bottom-up 2D-LC-MS and Semi-top-down GelFree-LC-MS Enhances Coverage of Proteome and Low Molecular Weight Short Open Reading Frame Encoded Peptides of the Archaeon Methanosarcina mazei.
    Cassidy L; Prasse D; Linke D; Schmitz RA; Tholey A
    J Proteome Res; 2016 Oct; 15(10):3773-3783. PubMed ID: 27557128
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identification and analysis of small proteins and short open reading frame encoded peptides in Hep3B cell.
    Wang B; Hao J; Pan N; Wang Z; Chen Y; Wan C
    J Proteomics; 2021 Jan; 230():103965. PubMed ID: 32891891
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Recent advances in mass spectrometry-based peptidomics workflows to identify short-open-reading-frame-encoded peptides and explore their functions.
    Fabre B; Combier JP; Plaza S
    Curr Opin Chem Biol; 2021 Feb; 60():122-130. PubMed ID: 33401134
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improved Identification of Small Open Reading Frames Encoded Peptides by Top-Down Proteomic Approaches and De Novo Sequencing.
    Wang B; Wang Z; Pan N; Huang J; Wan C
    Int J Mol Sci; 2021 May; 22(11):. PubMed ID: 34067398
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Depletion of High-Molecular-Mass Proteins for the Identification of Small Proteins and Short Open Reading Frame Encoded Peptides in Cellular Proteomes.
    Cassidy L; Kaulich PT; Tholey A
    J Proteome Res; 2019 Apr; 18(4):1725-1734. PubMed ID: 30779583
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improved Identification and Analysis of Small Open Reading Frame Encoded Polypeptides.
    Ma J; Diedrich JK; Jungreis I; Donaldson C; Vaughan J; Kellis M; Yates JR; Saghatelian A
    Anal Chem; 2016 Apr; 88(7):3967-75. PubMed ID: 27010111
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Top-Down Proteomics Applied to Human Cerebrospinal Fluid.
    Gay M; Sánchez-Jiménez E; Villarreal L; Vilanova M; Huguet R; Arauz-Garofalo G; Díaz-Lobo M; López-Ferrer D; Vilaseca M
    Methods Mol Biol; 2019; 2044():193-219. PubMed ID: 31432414
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Identification and characterization of sORF-encoded polypeptides.
    Chu Q; Ma J; Saghatelian A
    Crit Rev Biochem Mol Biol; 2015; 50(2):134-41. PubMed ID: 25857697
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Optimized Proteomics Workflow for the Detection of Small Proteins.
    Bartel J; Varadarajan AR; Sura T; Ahrens CH; Maaß S; Becher D
    J Proteome Res; 2020 Oct; 19(10):4004-4018. PubMed ID: 32812434
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Proteoforms expand the world of microproteins and short open reading frame-encoded peptides.
    Cassidy L; Kaulich PT; Tholey A
    iScience; 2023 Feb; 26(2):106069. PubMed ID: 36818287
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Chemical labeling and proteomics for characterization of unannotated small and alternative open reading frame-encoded polypeptides.
    Chen Y; Cao X; Loh KH; Slavoff SA
    Biochem Soc Trans; 2023 Jun; 51(3):1071-1082. PubMed ID: 37171061
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Complementarity of Different SDS-PAGE Gel Staining Methods for the Identification of Short Open Reading Frame-Encoded Peptides.
    Kaulich PT; Cassidy L; Weidenbach K; Schmitz RA; Tholey A
    Proteomics; 2020 Oct; 20(19-20):e2000084. PubMed ID: 32667133
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Integrated Bottom-Up and Top-Down Proteomics of Patient-Derived Breast Tumor Xenografts.
    Ntai I; LeDuc RD; Fellers RT; Erdmann-Gilmore P; Davies SR; Rumsey J; Early BP; Thomas PM; Li S; Compton PD; Ellis MJ; Ruggles KV; Fenyö D; Boja ES; Rodriguez H; Townsend RR; Kelleher NL
    Mol Cell Proteomics; 2016 Jan; 15(1):45-56. PubMed ID: 26503891
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Extended Range Proteomic Analysis (ERPA): a new and sensitive LC-MS platform for high sequence coverage of complex proteins with extensive post-translational modifications-comprehensive analysis of beta-casein and epidermal growth factor receptor (EGFR).
    Wu SL; Kim J; Hancock WS; Karger B
    J Proteome Res; 2005; 4(4):1155-70. PubMed ID: 16083266
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Chemoproteomic discovery of cysteine-containing human short open reading frames.
    Schwaid AG; Shannon DA; Ma J; Slavoff SA; Levin JZ; Weerapana E; Saghatelian A
    J Am Chem Soc; 2013 Nov; 135(45):16750-3. PubMed ID: 24152191
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Pressurized pepsin digestion in proteomics: an automatable alternative to trypsin for integrated top-down bottom-up proteomics.
    López-Ferrer D; Petritis K; Robinson EW; Hixson KK; Tian Z; Lee JH; Lee SW; Tolić N; Weitz KK; Belov ME; Smith RD; Pasa-Tolić L
    Mol Cell Proteomics; 2011 Feb; 10(2):M110.001479. PubMed ID: 20627868
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.