BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

155 related articles for article (PubMed ID: 34147063)

  • 1. SVNN: an efficient PacBio-specific pipeline for structural variations calling using neural networks.
    Akbarinejad S; Hadadian Nejad Yousefi M; Goudarzi M
    BMC Bioinformatics; 2021 Jun; 22(1):335. PubMed ID: 34147063
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment.
    Fu Y; Mahmoud M; Muraliraman VV; Sedlazeck FJ; Treangen TJ
    Gigascience; 2021 Sep; 10(9):. PubMed ID: 34561697
    [TBL] [Abstract][Full Text] [Related]  

  • 3. HISEA: HIerarchical SEed Aligner for PacBio data.
    Khiste N; Ilie L
    BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Benchmarking long-read genome sequence alignment tools for human genomics applications.
    LoTempio J; Delot E; Vilain E
    PeerJ; 2023; 11():e16515. PubMed ID: 38130927
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Sensitive alignment using paralogous sequence variants improves long-read mapping and variant calling in segmental duplications.
    Prodanov T; Bansal V
    Nucleic Acids Res; 2020 Nov; 48(19):e114. PubMed ID: 33035301
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Evaluating Structural Variation Detection Tools for Long-Read Sequencing Datasets in
    Luan MW; Zhang XM; Zhu ZB; Chen Y; Xie SQ
    Front Genet; 2020; 11():159. PubMed ID: 32211024
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Chaining for accurate alignment of erroneous long reads to acyclic variation graphs.
    Ma J; Cáceres M; Salmela L; Mäkinen V; Tomescu AI
    Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37494467
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structural variants identified by Oxford Nanopore PromethION sequencing of the human genome.
    De Coster W; De Rijk P; De Roeck A; De Pooter T; D'Hert S; Strazisar M; Sleegers K; Van Broeckhoven C
    Genome Res; 2019 Jul; 29(7):1178-1187. PubMed ID: 31186302
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Dysgu: efficient structural variant calling using short or long reads.
    Cleal K; Baird DM
    Nucleic Acids Res; 2022 May; 50(9):e53. PubMed ID: 35100420
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation.
    Jiang T; Liu S; Cao S; Liu Y; Cui Z; Wang Y; Guo H
    BMC Bioinformatics; 2021 Nov; 22(1):552. PubMed ID: 34772337
    [TBL] [Abstract][Full Text] [Related]  

  • 12. NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data.
    Fang L; Hu J; Wang D; Wang K
    BMC Bioinformatics; 2018 May; 19(1):180. PubMed ID: 29792160
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Clair3-trio: high-performance Nanopore long-read variant calling in family trios with trio-to-trio deep neural networks.
    Su J; Zheng Z; Ahmed SS; Lam TW; Luo R
    Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35849103
    [TBL] [Abstract][Full Text] [Related]  

  • 14. NPBSS: a new PacBio sequencing simulator for generating the continuous long reads with an empirical model.
    Wei ZG; Zhang SW
    BMC Bioinformatics; 2018 May; 19(1):177. PubMed ID: 29788930
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Recalibration of mapping quality scores in Illumina short-read alignments improves SNP detection results in low-coverage sequencing data.
    Cline E; Wisittipanit N; Boongoen T; Chukeatirote E; Struss D; Eungwanichayapant A
    PeerJ; 2020; 8():e10501. PubMed ID: 33354434
    [TBL] [Abstract][Full Text] [Related]  

  • 16. PacRAT: a program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment.
    Yeh CC; Amorosi CJ; Showman S; Dunham MJ
    Bioinformatics; 2022 May; 38(10):2927-2929. PubMed ID: 35561209
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparison of multiple algorithms to reliably detect structural variants in pears.
    Liu Y; Zhang M; Sun J; Chang W; Sun M; Zhang S; Wu J
    BMC Genomics; 2020 Jan; 21(1):61. PubMed ID: 31959124
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Improvement of large copy number variant detection by whole genome nanopore sequencing.
    Cuenca-Guardiola J; de la Morena-Barrio B; García JL; Sanchis-Juan A; Corral J; Fernández-Breis JT
    J Adv Res; 2023 Aug; 50():145-158. PubMed ID: 36323370
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Minimap2: pairwise alignment for nucleotide sequences.
    Li H
    Bioinformatics; 2018 Sep; 34(18):3094-3100. PubMed ID: 29750242
    [TBL] [Abstract][Full Text] [Related]  

  • 20. An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data.
    Zhang J; Wang J; Wu Y
    BMC Bioinformatics; 2012 Apr; 13 Suppl 6(Suppl 6):S6. PubMed ID: 22537045
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.