These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

155 related articles for article (PubMed ID: 34154643)

  • 1. TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation.
    ; Elliott TA; Heitkam T; Hubley R; Quesneville H; Suh A; Wheeler TJ
    Mob DNA; 2021 Jun; 12(1):16. PubMed ID: 34154643
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Orthoptera-TElib: a library of Orthoptera transposable elements for TE annotation.
    Liu X; Zhao L; Majid M; Huang Y
    Mob DNA; 2024 Mar; 15(1):5. PubMed ID: 38486291
    [TBL] [Abstract][Full Text] [Related]  

  • 3. TIR-Learner, a New Ensemble Method for TIR Transposable Element Annotation, Provides Evidence for Abundant New Transposable Elements in the Maize Genome.
    Su W; Gu X; Peterson T
    Mol Plant; 2019 Mar; 12(3):447-460. PubMed ID: 30802553
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Exploring repetitive DNA landscapes using REPCLASS, a tool that automates the classification of transposable elements in eukaryotic genomes.
    Feschotte C; Keswani U; Ranganathan N; Guibotsy ML; Levine D
    Genome Biol Evol; 2009 Jul; 1():205-20. PubMed ID: 20333191
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes.
    Janicki M; Rooke R; Yang G
    Chromosome Res; 2011 Aug; 19(6):787-808. PubMed ID: 21850457
    [TBL] [Abstract][Full Text] [Related]  

  • 6. RepetDB: a unified resource for transposable element references.
    Amselem J; Cornut G; Choisne N; Alaux M; Alfama-Depauw F; Jamilloux V; Maumus F; Letellier T; Luyten I; Pommier C; Adam-Blondon AF; Quesneville H
    Mob DNA; 2019; 10():6. PubMed ID: 30719103
    [TBL] [Abstract][Full Text] [Related]  

  • 7. TEnest: automated chronological annotation and visualization of nested plant transposable elements.
    Kronmiller BA; Wise RP
    Plant Physiol; 2008 Jan; 146(1):45-59. PubMed ID: 18032588
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Genomic re-assessment of the transposable element landscape of the potato genome.
    Zavallo D; Crescente JM; Gantuz M; Leone M; Vanzetti LS; Masuelli RW; Asurmendi S
    Plant Cell Rep; 2020 Sep; 39(9):1161-1174. PubMed ID: 32435866
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PlaNC-TE: a comprehensive knowledgebase of non-coding RNAs and transposable elements in plants.
    Pedro DLF; Lorenzetti APR; Domingues DS; Paschoal AR
    Database (Oxford); 2018 Jan; 2018():1-7. PubMed ID: 30101318
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A call for benchmarking transposable element annotation methods.
    Hoen DR; Hickey G; Bourque G; Casacuberta J; Cordaux R; Feschotte C; Fiston-Lavier AS; Hua-Van A; Hubley R; Kapusta A; Lerat E; Maumus F; Pollock DD; Quesneville H; Smit A; Wheeler TJ; Bureau TE; Blanchette M
    Mob DNA; 2015; 6():13. PubMed ID: 26244060
    [TBL] [Abstract][Full Text] [Related]  

  • 11. McClintock: An Integrated Pipeline for Detecting Transposable Element Insertions in Whole-Genome Shotgun Sequencing Data.
    Nelson MG; Linheiro RS; Bergman CM
    G3 (Bethesda); 2017 Aug; 7(8):2763-2778. PubMed ID: 28637810
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Mitochondrial Disease Sequence Data Resource (MSeqDR): a global grass-roots consortium to facilitate deposition, curation, annotation, and integrated analysis of genomic data for the mitochondrial disease clinical and research communities.
    Falk MJ; Shen L; Gonzalez M; Leipzig J; Lott MT; Stassen AP; Diroma MA; Navarro-Gomez D; Yeske P; Bai R; Boles RG; Brilhante V; Ralph D; DaRe JT; Shelton R; Terry SF; Zhang Z; Copeland WC; van Oven M; Prokisch H; Wallace DC; Attimonelli M; Krotoski D; Zuchner S; Gai X; ; ; ; ; ;
    Mol Genet Metab; 2015 Mar; 114(3):388-96. PubMed ID: 25542617
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A Tutorial of EDTA: Extensive De Novo TE Annotator.
    Su W; Ou S; Hufford MB; Peterson T
    Methods Mol Biol; 2021; 2250():55-67. PubMed ID: 33900591
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Identification of transposons near predicted lncRNA and mRNA pools of Prunus mume using an integrative transposable element database constructed from Rosaceae plant genomes.
    Ma K; Zhang Q; Cheng T; Wang J
    Mol Genet Genomics; 2018 Oct; 293(5):1301-1316. PubMed ID: 29804262
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Characterization and functional annotation of nested transposable elements in eukaryotic genomes.
    Gao C; Xiao M; Ren X; Hayward A; Yin J; Wu L; Fu D; Li J
    Genomics; 2012 Oct; 100(4):222-30. PubMed ID: 22800764
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The future of transposable element annotation and their classification in the light of functional genomics - what we can learn from the fables of Jean de la Fontaine?
    Arensburger P; Piégu B; Bigot Y
    Mob Genet Elements; 2016; 6(6):e1256852. PubMed ID: 28090383
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Dfam: a database of repetitive DNA based on profile hidden Markov models.
    Wheeler TJ; Clements J; Eddy SR; Hubley R; Jones TA; Jurka J; Smit AF; Finn RD
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D70-82. PubMed ID: 23203985
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A survey of transposable element classification systems--a call for a fundamental update to meet the challenge of their diversity and complexity.
    Piégu B; Bire S; Arensburger P; Bigot Y
    Mol Phylogenet Evol; 2015 May; 86():90-109. PubMed ID: 25797922
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Transposome: a toolkit for annotation of transposable element families from unassembled sequence reads.
    Staton SE; Burke JM
    Bioinformatics; 2015 Jun; 31(11):1827-9. PubMed ID: 25644271
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 8.