BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

228 related articles for article (PubMed ID: 34165490)

  • 1. SOMDE: a scalable method for identifying spatially variable genes with self-organizing map.
    Hao M; Hua K; Zhang X
    Bioinformatics; 2021 Dec; 37(23):4392-4398. PubMed ID: 34165490
    [TBL] [Abstract][Full Text] [Related]  

  • 2. GSEApy: a comprehensive package for performing gene set enrichment analysis in Python.
    Fang Z; Liu X; Peltz G
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36426870
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Efficient population-scale variant analysis and prioritization with VAPr.
    Birmingham A; Mark AM; Mazzaferro C; Xu G; Fisch KM
    Bioinformatics; 2018 Aug; 34(16):2843-2845. PubMed ID: 29659724
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Scalable clustering algorithms for continuous environmental flow cytometry.
    Hyrkas J; Clayton S; Ribalet F; Halperin D; Armbrust EV; Howe B
    Bioinformatics; 2016 Feb; 32(3):417-23. PubMed ID: 26476780
    [TBL] [Abstract][Full Text] [Related]  

  • 5. scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data.
    Faure L; Soldatov R; Kharchenko PV; Adameyko I
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36394263
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis.
    Aihara G; Clifton K; Chen M; Li Z; Atta L; Miller BF; Satija R; Hickey JW; Fan J
    Bioinformatics; 2024 Jul; 40(7):. PubMed ID: 38902953
    [TBL] [Abstract][Full Text] [Related]  

  • 7. graphkernels: R and Python packages for graph comparison.
    Sugiyama M; Ghisu ME; Llinares-López F; Borgwardt K
    Bioinformatics; 2018 Feb; 34(3):530-532. PubMed ID: 29028902
    [TBL] [Abstract][Full Text] [Related]  

  • 8. PyIOmica: longitudinal omics analysis and trend identification.
    Domanskyi S; Piermarocchi C; Mias GI
    Bioinformatics; 2020 Apr; 36(7):2306-2307. PubMed ID: 31778155
    [TBL] [Abstract][Full Text] [Related]  

  • 9. GOThresher: a program to remove annotation biases from protein function annotation datasets.
    Joshi P; Banerjee S; Hu X; Khade PM; Friedberg I
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36688705
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Rabifier2: an improved bioinformatic classifier of Rab GTPases.
    Surkont J; Diekmann Y; Pereira-Leal JB
    Bioinformatics; 2017 Feb; 33(4):568-570. PubMed ID: 27797763
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Vivarium: an interface and engine for integrative multiscale modeling in computational biology.
    Agmon E; Spangler RK; Skalnik CJ; Poole W; Peirce SM; Morrison JH; Covert MW
    Bioinformatics; 2022 Mar; 38(7):1972-1979. PubMed ID: 35134830
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Unravelling spatial gene associations with SEAGAL: a Python package for spatial transcriptomics data analysis and visualization.
    Wang L; Liu C; Gao Y; Zhang XH; Liu Z
    Bioinformatics; 2023 Jul; 39(7):. PubMed ID: 37436699
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CoCoNet: an efficient deep learning tool for viral metagenome binning.
    Arisdakessian CG; Nigro OD; Steward GF; Poisson G; Belcaid M
    Bioinformatics; 2021 Sep; 37(18):2803-2810. PubMed ID: 33822891
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RTK: efficient rarefaction analysis of large datasets.
    Saary P; Forslund K; Bork P; Hildebrand F
    Bioinformatics; 2017 Aug; 33(16):2594-2595. PubMed ID: 28398468
    [TBL] [Abstract][Full Text] [Related]  

  • 15. orfipy: a fast and flexible tool for extracting ORFs.
    Singh U; Wurtele ES
    Bioinformatics; 2021 Sep; 37(18):3019-3020. PubMed ID: 33576786
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Interactive network visualization in Jupyter notebooks: visJS2jupyter.
    Rosenthal SB; Len J; Webster M; Gary A; Birmingham A; Fisch KM
    Bioinformatics; 2018 Jan; 34(1):126-128. PubMed ID: 28968701
    [TBL] [Abstract][Full Text] [Related]  

  • 17. scMAGS: Marker gene selection from scRNA-seq data for spatial transcriptomics studies.
    Baran Y; Doğan B
    Comput Biol Med; 2023 Mar; 155():106634. PubMed ID: 36774895
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DendroPy: a Python library for phylogenetic computing.
    Sukumaran J; Holder MT
    Bioinformatics; 2010 Jun; 26(12):1569-71. PubMed ID: 20421198
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DBDIpy: a Python library for processing of untargeted datasets from real-time plasma ionization mass spectrometry.
    Weidner L; Hemmler D; Rychlik M; Schmitt-Kopplin P
    Bioinformatics; 2023 Feb; 39(2):. PubMed ID: 36786403
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Analysing high-throughput sequencing data in Python with HTSeq 2.0.
    Putri GH; Anders S; Pyl PT; Pimanda JE; Zanini F
    Bioinformatics; 2022 May; 38(10):2943-2945. PubMed ID: 35561197
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.