These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

162 related articles for article (PubMed ID: 34166361)

  • 1. Identifying the combinatorial control of signal-dependent transcription factors.
    Wang N; Lefaudeux D; Mazumder A; Li JJ; Hoffmann A
    PLoS Comput Biol; 2021 Jun; 17(6):e1009095. PubMed ID: 34166361
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements.
    Chen X; Neuwald AF; Hilakivi-Clarke L; Clarke R; Xuan J
    PLoS Comput Biol; 2021 Jul; 17(7):e1009203. PubMed ID: 34292930
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling.
    Hsu SD; Huang HY; Chou CH; Sun YM; Hsu MT; Tsou AP
    BMC Genomics; 2015; 16 Suppl 2(Suppl 2):S12. PubMed ID: 25707768
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Large-scale learning of combinatorial transcriptional dynamics from gene expression.
    Asif HM; Sanguinetti G
    Bioinformatics; 2011 May; 27(9):1277-83. PubMed ID: 21367870
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison.
    Titsias MK; Honkela A; Lawrence ND; Rattray M
    BMC Syst Biol; 2012 May; 6():53. PubMed ID: 22647244
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.
    Zhang Y; Xuan J; de los Reyes BG; Clarke R; Ressom HW
    BMC Bioinformatics; 2008 Apr; 9():203. PubMed ID: 18426580
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks.
    Marbach D; Roy S; Ay F; Meyer PE; Candeias R; Kahveci T; Bristow CA; Kellis M
    Genome Res; 2012 Jul; 22(7):1334-49. PubMed ID: 22456606
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Iterative Modeling Reveals Evidence of Sequential Transcriptional Control Mechanisms.
    Cheng CS; Behar MS; Suryawanshi GW; Feldman KE; Spreafico R; Hoffmann A
    Cell Syst; 2017 Mar; 4(3):330-343.e5. PubMed ID: 28237795
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Efficient inference for sparse latent variable models of transcriptional regulation.
    Dai Z; Iqbal M; Lawrence ND; Rattray M
    Bioinformatics; 2017 Dec; 33(23):3776-3783. PubMed ID: 28961802
    [TBL] [Abstract][Full Text] [Related]  

  • 10. cDREM: inferring dynamic combinatorial gene regulation.
    Wise A; Bar-Joseph Z
    J Comput Biol; 2015 Apr; 22(4):324-33. PubMed ID: 25844671
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Investigating the effect of dependence between conditions with Bayesian Linear Mixed Models for motif activity analysis.
    Lederer S; Heskes T; van Heeringen SJ; Albers CA
    PLoS One; 2020; 15(5):e0231824. PubMed ID: 32357166
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments.
    Jackson CA; Castro DM; Saldi GA; Bonneau R; Gresham D
    Elife; 2020 Jan; 9():. PubMed ID: 31985403
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Transcriptional circuitry atlas of genetic diverse unstimulated murine and human macrophages define disparity in population-wide innate immunity.
    Mishra B; Athar M; Mukhtar MS
    Sci Rep; 2021 Apr; 11(1):7373. PubMed ID: 33795737
    [TBL] [Abstract][Full Text] [Related]  

  • 14. TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information.
    Liu Q; Tan Y; Huang T; Ding G; Tu Z; Liu L; Li Y; Dai H; Xie L
    BMC Bioinformatics; 2010 Dec; 11 Suppl 11(Suppl 11):S5. PubMed ID: 21172055
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Bayesian variable selection for gene expression modeling with regulatory motif binding sites in neuroinflammatory events.
    Liu KY; Zhou X; Kan K; Wong ST
    Neuroinformatics; 2006; 4(1):95-117. PubMed ID: 16595861
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Inter- and intra-combinatorial regulation by transcription factors and microRNAs.
    Zhou Y; Ferguson J; Chang JT; Kluger Y
    BMC Genomics; 2007 Oct; 8():396. PubMed ID: 17971223
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Inferring microRNA and transcription factor regulatory networks in heterogeneous data.
    Le TD; Liu L; Liu B; Tsykin A; Goodall GJ; Satou K; Li J
    BMC Bioinformatics; 2013 Mar; 14():92. PubMed ID: 23497388
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identification of transcription factor's targets using tissue-specific transcriptomic data in Arabidopsis thaliana.
    Srivastava GP; Li P; Liu J; Xu D
    BMC Syst Biol; 2010 Sep; 4 Suppl 2(Suppl 2):S2. PubMed ID: 20840729
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Selection of thermodynamic models for combinatorial control of multiple transcription factors in early differentiation of embryonic stem cells.
    Chen CC; Zhu XG; Zhong S
    BMC Genomics; 2008; 9 Suppl 1(Suppl 1):S18. PubMed ID: 18366607
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Inference of TFRNs (2).
    Matsuda H
    Methods Mol Biol; 2014; 1164():97-107. PubMed ID: 24927838
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.