BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

188 related articles for article (PubMed ID: 34174426)

  • 1. Integrating thermodynamic and enzymatic constraints into genome-scale metabolic models.
    Yang X; Mao Z; Zhao X; Wang R; Zhang P; Cai J; Xue C; Ma H
    Metab Eng; 2021 Sep; 67():133-144. PubMed ID: 34174426
    [TBL] [Abstract][Full Text] [Related]  

  • 2. [Development of metabolic models with multiple constraints: a review].
    Yang X; Zhang P; Mao Z; Zhao X; Wang R; Cai J; Wang Z; Ma H
    Sheng Wu Gong Cheng Xue Bao; 2022 Feb; 38(2):531-545. PubMed ID: 35234380
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Improving pathway prediction accuracy of constraints-based metabolic network models by treating enzymes as microcompartments.
    Yang X; Mao Z; Huang J; Wang R; Dong H; Zhang Y; Ma H
    Synth Syst Biotechnol; 2023 Dec; 8(4):597-605. PubMed ID: 37743907
    [TBL] [Abstract][Full Text] [Related]  

  • 4. OptMDFpathway: Identification of metabolic pathways with maximal thermodynamic driving force and its application for analyzing the endogenous CO2 fixation potential of Escherichia coli.
    Hädicke O; von Kamp A; Aydogan T; Klamt S
    PLoS Comput Biol; 2018 Sep; 14(9):e1006492. PubMed ID: 30248096
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ECMpy, a Simplified Workflow for Constructing Enzymatic Constrained Metabolic Network Model.
    Mao Z; Zhao X; Yang X; Zhang P; Du J; Yuan Q; Ma H
    Biomolecules; 2022 Jan; 12(1):. PubMed ID: 35053213
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models.
    Pandey V; Hadadi N; Hatzimanikatis V
    PLoS Comput Biol; 2019 May; 15(5):e1007036. PubMed ID: 31083653
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Automatic construction of metabolic models with enzyme constraints.
    Bekiaris PS; Klamt S
    BMC Bioinformatics; 2020 Jan; 21(1):19. PubMed ID: 31937255
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Quantitative assessment of thermodynamic constraints on the solution space of genome-scale metabolic models.
    Hamilton JJ; Dwivedi V; Reed JL
    Biophys J; 2013 Jul; 105(2):512-22. PubMed ID: 23870272
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Thermodynamics-based metabolic flux analysis.
    Henry CS; Broadbelt LJ; Hatzimanikatis V
    Biophys J; 2007 Mar; 92(5):1792-805. PubMed ID: 17172310
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Systematic assignment of thermodynamic constraints in metabolic network models.
    Kümmel A; Panke S; Heinemann M
    BMC Bioinformatics; 2006 Nov; 7():512. PubMed ID: 17123434
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Interplay between constraints, objectives, and optimality for genome-scale stoichiometric models.
    Maarleveld TR; Wortel MT; Olivier BG; Teusink B; Bruggeman FJ
    PLoS Comput Biol; 2015 Apr; 11(4):e1004166. PubMed ID: 25849486
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Toward Synthetic Biology Strategies for Adipic Acid Production: An in Silico Tool for Combined Thermodynamics and Stoichiometric Analysis of Metabolic Networks.
    Averesch NJH; Martínez VS; Nielsen LK; Krömer JO
    ACS Synth Biol; 2018 Feb; 7(2):490-509. PubMed ID: 29237121
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Towards creating an extended metabolic model (EMM) for E. coli using enzyme promiscuity prediction and metabolomics data.
    Amin SA; Chavez E; Porokhin V; Nair NU; Hassoun S
    Microb Cell Fact; 2019 Jun; 18(1):109. PubMed ID: 31196115
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Thermodynamic Constraints Improve Metabolic Networks.
    Krumholz EW; Libourel IGL
    Biophys J; 2017 Aug; 113(3):679-689. PubMed ID: 28793222
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A scalable algorithm to explore the Gibbs energy landscape of genome-scale metabolic networks.
    De Martino D; Figliuzzi M; De Martino A; Marinari E
    PLoS Comput Biol; 2012; 8(6):e1002562. PubMed ID: 22737065
    [TBL] [Abstract][Full Text] [Related]  

  • 16. [Progress and application of metabolic network model based on enzyme constraints].
    Zhao X; Yang X; Mao Z; Ma H
    Sheng Wu Gong Cheng Xue Bao; 2019 Oct; 35(10):1914-1924. PubMed ID: 31668038
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Assessing Escherichia coli metabolism models and simulation approaches in phenotype predictions: Validation against experimental data.
    Costa RS; Vinga S
    Biotechnol Prog; 2018 Nov; 34(6):1344-1354. PubMed ID: 30294889
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Towards kinetic modeling of genome-scale metabolic networks without sacrificing stoichiometric, thermodynamic and physiological constraints.
    Chakrabarti A; Miskovic L; Soh KC; Hatzimanikatis V
    Biotechnol J; 2013 Sep; 8(9):1043-57. PubMed ID: 23868566
    [TBL] [Abstract][Full Text] [Related]  

  • 19. NExT: integration of thermodynamic constraints and metabolomics data into a metabolic network.
    Martínez VS; Nielsen LK
    Methods Mol Biol; 2014; 1191():65-78. PubMed ID: 25178784
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli.
    McCloskey D; Palsson BØ; Feist AM
    Mol Syst Biol; 2013; 9():661. PubMed ID: 23632383
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.