BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

534 related articles for article (PubMed ID: 34197738)

  • 1. Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression.
    Vos ESM; Valdes-Quezada C; Huang Y; Allahyar A; Verstegen MJAM; Felder AK; van der Vegt F; Uijttewaal ECH; Krijger PHL; de Laat W
    Mol Cell; 2021 Aug; 81(15):3082-3095.e6. PubMed ID: 34197738
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Specific Contributions of Cohesin-SA1 and Cohesin-SA2 to TADs and Polycomb Domains in Embryonic Stem Cells.
    Cuadrado A; Giménez-Llorente D; Kojic A; Rodríguez-Corsino M; Cuartero Y; Martín-Serrano G; Gómez-López G; Marti-Renom MA; Losada A
    Cell Rep; 2019 Jun; 27(12):3500-3510.e4. PubMed ID: 31216471
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.
    Wutz G; Várnai C; Nagasaka K; Cisneros DA; Stocsits RR; Tang W; Schoenfelder S; Jessberger G; Muhar M; Hossain MJ; Walther N; Koch B; Kueblbeck M; Ellenberg J; Zuber J; Fraser P; Peters JM
    EMBO J; 2017 Dec; 36(24):3573-3599. PubMed ID: 29217591
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Building regulatory landscapes reveals that an enhancer can recruit cohesin to create contact domains, engage CTCF sites and activate distant genes.
    Rinzema NJ; Sofiadis K; Tjalsma SJD; Verstegen MJAM; Oz Y; Valdes-Quezada C; Felder AK; Filipovska T; van der Elst S; de Andrade Dos Ramos Z; Han R; Krijger PHL; de Laat W
    Nat Struct Mol Biol; 2022 Jun; 29(6):563-574. PubMed ID: 35710842
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Variable Extent of Lineage-Specificity and Developmental Stage-Specificity of Cohesin and CCCTC-Binding Factor Binding Within the Immunoglobulin and T Cell Receptor Loci.
    Loguercio S; Barajas-Mora EM; Shih HY; Krangel MS; Feeney AJ
    Front Immunol; 2018; 9():425. PubMed ID: 29593713
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Cohesin is required for long-range enhancer action at the Shh locus.
    Kane L; Williamson I; Flyamer IM; Kumar Y; Hill RE; Lettice LA; Bickmore WA
    Nat Struct Mol Biol; 2022 Sep; 29(9):891-897. PubMed ID: 36097291
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CTCF as a boundary factor for cohesin-mediated loop extrusion: evidence for a multi-step mechanism.
    Hansen AS
    Nucleus; 2020 Dec; 11(1):132-148. PubMed ID: 32631111
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF.
    Aljahani A; Hua P; Karpinska MA; Quililan K; Davies JOJ; Oudelaar AM
    Nat Commun; 2022 Apr; 13(1):2139. PubMed ID: 35440598
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Integrative characterization of G-Quadruplexes in the three-dimensional chromatin structure.
    Hou Y; Li F; Zhang R; Li S; Liu H; Qin ZS; Sun X
    Epigenetics; 2019 Sep; 14(9):894-911. PubMed ID: 31177910
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Impact of 3D genome organization, guided by cohesin and CTCF looping, on sex-biased chromatin interactions and gene expression in mouse liver.
    Matthews BJ; Waxman DJ
    Epigenetics Chromatin; 2020 Jul; 13(1):30. PubMed ID: 32680543
    [TBL] [Abstract][Full Text] [Related]  

  • 11. HOTTIP-dependent R-loop formation regulates CTCF boundary activity and TAD integrity in leukemia.
    Luo H; Zhu G; Eshelman MA; Fung TK; Lai Q; Wang F; Zeisig BB; Lesperance J; Ma X; Chen S; Cesari N; Cogle C; Chen B; Xu B; Yang FC; So CWE; Qiu Y; Xu M; Huang S
    Mol Cell; 2022 Feb; 82(4):833-851.e11. PubMed ID: 35180428
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Computational prediction of CTCF/cohesin-based intra-TAD loops that insulate chromatin contacts and gene expression in mouse liver.
    Matthews BJ; Waxman DJ
    Elife; 2018 May; 7():. PubMed ID: 29757144
    [TBL] [Abstract][Full Text] [Related]  

  • 13. CTCF is a DNA-tension-dependent barrier to cohesin-mediated loop extrusion.
    Davidson IF; Barth R; Zaczek M; van der Torre J; Tang W; Nagasaka K; Janissen R; Kerssemakers J; Wutz G; Dekker C; Peters JM
    Nature; 2023 Apr; 616(7958):822-827. PubMed ID: 37076620
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Chromatin jets define the properties of cohesin-driven in vivo loop extrusion.
    Guo Y; Al-Jibury E; Garcia-Millan R; Ntagiantas K; King JWD; Nash AJ; Galjart N; Lenhard B; Rueckert D; Fisher AG; Pruessner G; Merkenschlager M
    Mol Cell; 2022 Oct; 82(20):3769-3780.e5. PubMed ID: 36182691
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The Myc-associated zinc finger protein (MAZ) works together with CTCF to control cohesin positioning and genome organization.
    Xiao T; Li X; Felsenfeld G
    Proc Natl Acad Sci U S A; 2021 Feb; 118(7):. PubMed ID: 33558242
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Tissue-specific CTCF-cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo.
    Hanssen LLP; Kassouf MT; Oudelaar AM; Biggs D; Preece C; Downes DJ; Gosden M; Sharpe JA; Sloane-Stanley JA; Hughes JR; Davies B; Higgs DR
    Nat Cell Biol; 2017 Aug; 19(8):952-961. PubMed ID: 28737770
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Opposing Effects of Cohesin and Transcription on CTCF Organization Revealed by Super-resolution Imaging.
    Gu B; Comerci CJ; McCarthy DG; Saurabh S; Moerner WE; Wysocka J
    Mol Cell; 2020 Nov; 80(4):699-711.e7. PubMed ID: 33091336
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders.
    Uusküla-Reimand L; Hou H; Samavarchi-Tehrani P; Rudan MV; Liang M; Medina-Rivera A; Mohammed H; Schmidt D; Schwalie P; Young EJ; Reimand J; Hadjur S; Gingras AC; Wilson MD
    Genome Biol; 2016 Aug; 17(1):182. PubMed ID: 27582050
    [TBL] [Abstract][Full Text] [Related]  

  • 19. STAG2 mutations alter CTCF-anchored loop extrusion, reduce cis-regulatory interactions and EWSR1-FLI1 activity in Ewing sarcoma.
    Surdez D; Zaidi S; Grossetête S; Laud-Duval K; Ferre AS; Mous L; Vourc'h T; Tirode F; Pierron G; Raynal V; Baulande S; Brunet E; Hill V; Delattre O
    Cancer Cell; 2021 Jun; 39(6):810-826.e9. PubMed ID: 33930311
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CTCF mediates chromatin looping via N-terminal domain-dependent cohesin retention.
    Pugacheva EM; Kubo N; Loukinov D; Tajmul M; Kang S; Kovalchuk AL; Strunnikov AV; Zentner GE; Ren B; Lobanenkov VV
    Proc Natl Acad Sci U S A; 2020 Jan; 117(4):2020-2031. PubMed ID: 31937660
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 27.