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4. Integrating the BIDS Neuroimaging Data Format and Workflow Optimization for Large-Scale Medical Image Analysis. Bao S; Boyd BD; Kanakaraj P; Ramadass K; Meyer FAC; Liu Y; Duett WE; Huo Y; Lyu I; Zald DH; Smith SA; Rogers BP; Landman BA J Digit Imaging; 2022 Dec; 35(6):1576-1589. PubMed ID: 35922700 [TBL] [Abstract][Full Text] [Related]
5. A reproducible and generalizable software workflow for analysis of large-scale neuroimaging data collections using BIDS Apps. Zhao C; Jarecka D; Covitz S; Chen Y; Eickhoff SB; Fair DA; Franco AR; Halchenko YO; Hendrickson TJ; Hoffstaedter F; Houghton A; Kiar G; Macdonald A; Mehta K; Milham MP; Salo T; Hanke M; Ghosh SS; Cieslak M; Satterthwaite TD bioRxiv; 2023 Aug; ():. PubMed ID: 37645999 [TBL] [Abstract][Full Text] [Related]
6. BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. Gorgolewski KJ; Alfaro-Almagro F; Auer T; Bellec P; Capotă M; Chakravarty MM; Churchill NW; Cohen AL; Craddock RC; Devenyi GA; Eklund A; Esteban O; Flandin G; Ghosh SS; Guntupalli JS; Jenkinson M; Keshavan A; Kiar G; Liem F; Raamana PR; Raffelt D; Steele CJ; Quirion PO; Smith RE; Strother SC; Varoquaux G; Wang Y; Yarkoni T; Poldrack RA PLoS Comput Biol; 2017 Mar; 13(3):e1005209. PubMed ID: 28278228 [TBL] [Abstract][Full Text] [Related]
7. Clinica: An Open-Source Software Platform for Reproducible Clinical Neuroscience Studies. Routier A; Burgos N; Díaz M; Bacci M; Bottani S; El-Rifai O; Fontanella S; Gori P; Guillon J; Guyot A; Hassanaly R; Jacquemont T; Lu P; Marcoux A; Moreau T; Samper-González J; Teichmann M; Thibeau-Sutre E; Vaillant G; Wen J; Wild A; Habert MO; Durrleman S; Colliot O Front Neuroinform; 2021; 15():689675. PubMed ID: 34483871 [TBL] [Abstract][Full Text] [Related]
8. BMAT: An open-source BIDS managing and analysis tool. Vanden Bulcke C; Wynen M; Detobel J; La Rosa F; Absinta M; Dricot L; Macq B; Bach Cuadra M; Maggi P Neuroimage Clin; 2022; 36():103252. PubMed ID: 36451357 [TBL] [Abstract][Full Text] [Related]
9. NeuroPycon: An open-source python toolbox for fast multi-modal and reproducible brain connectivity pipelines. Meunier D; Pascarella A; Altukhov D; Jas M; Combrisson E; Lajnef T; Bertrand-Dubois D; Hadid V; Alamian G; Alves J; Barlaam F; Saive AL; Dehgan A; Jerbi K Neuroimage; 2020 Oct; 219():117020. PubMed ID: 32522662 [TBL] [Abstract][Full Text] [Related]
10. Neurodesk: An accessible, flexible, and portable data analysis environment for reproducible neuroimaging. Renton AI; Dao TT; Johnstone T; Civier O; Sullivan RP; White DJ; Lyons P; Slade BM; Abbott DF; Amos TJ; Bollmann S; Botting A; Campbell MEJ; Chang J; Close TG; Eckstein K; Egan GF; Evas S; Flandin G; Garner KG; Garrido MI; Ghosh SS; Grignard M; Hannan AJ; Huber R; Kaczmarzyk JR; Kasper L; Kuhlmann L; Lou K; Mantilla-Ramos YJ; Mattingley JB; Morris J; Narayanan A; Pestilli F; Puce A; Ribeiro FL; Rogasch NC; Rorden C; Schira M; Shaw TB; Sowman PF; Spitz G; Stewart A; Ye X; Zhu JD; Hughes ME; Narayanan A; Bollmann S Res Sq; 2023 Mar; ():. PubMed ID: 36993557 [TBL] [Abstract][Full Text] [Related]
11. An Automated Tool to Classify and Transform Unstructured MRI Data into BIDS Datasets. Bartnik A; Singh S; Sum C; Smith M; Bergsland N; Zivadinov R; Dwyer MG Neuroinformatics; 2024 Mar; ():. PubMed ID: 38530566 [TBL] [Abstract][Full Text] [Related]
12. MEG-BIDS, the brain imaging data structure extended to magnetoencephalography. Niso G; Gorgolewski KJ; Bock E; Brooks TL; Flandin G; Gramfort A; Henson RN; Jas M; Litvak V; T Moreau J; Oostenveld R; Schoffelen JM; Tadel F; Wexler J; Baillet S Sci Data; 2018 Jun; 5():180110. PubMed ID: 29917016 [TBL] [Abstract][Full Text] [Related]
13. Web-based processing of physiological noise in fMRI: addition of the PhysIO toolbox to CBRAIN. Valevicius D; Beck N; Kasper L; Boroday S; Bayer J; Rioux P; Caron B; Adalat R; Evans AC; Khalili-Mahani N Front Neuroinform; 2023; 17():1251023. PubMed ID: 37841811 [TBL] [Abstract][Full Text] [Related]
14. qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data. Karakuzu A; Appelhoff S; Auer T; Boudreau M; Feingold F; Khan AR; Lazari A; Markiewicz C; Mulder M; Phillips C; Salo T; Stikov N; Whitaker K; de Hollander G Sci Data; 2022 Aug; 9(1):517. PubMed ID: 36002444 [TBL] [Abstract][Full Text] [Related]
15. BrainForge: an online data analysis platform for integrative neuroimaging acquisition, analysis, and sharing. Verner E; Petropoulos H; Baker B; Bockholt HJ; Fries J; Bohsali A; Raja R; Trinh DH; Calhoun V Concurr Comput; 2023 Aug; 35(18):. PubMed ID: 37744210 [TBL] [Abstract][Full Text] [Related]
16. Neuroinformatics Software Applications Supporting Electronic Data Capture, Management, and Sharing for the Neuroimaging Community. Nichols BN; Pohl KM Neuropsychol Rev; 2015 Sep; 25(3):356-68. PubMed ID: 26267019 [TBL] [Abstract][Full Text] [Related]
17. Common Data Elements, Scalable Data Management Infrastructure, and Analytics Workflows for Large-Scale Neuroimaging Studies. Kuplicki R; Touthang J; Al Zoubi O; Mayeli A; Misaki M; ; Aupperle RL; Teague TK; McKinney BA; Paulus MP; Bodurka J Front Psychiatry; 2021; 12():682495. PubMed ID: 34220587 [TBL] [Abstract][Full Text] [Related]
18. BIDScoin: A User-Friendly Application to Convert Source Data to Brain Imaging Data Structure. Zwiers MP; Moia S; Oostenveld R Front Neuroinform; 2021; 15():770608. PubMed ID: 35095452 [TBL] [Abstract][Full Text] [Related]
19. ASL-BIDS, the brain imaging data structure extension for arterial spin labeling. Clement P; Castellaro M; Okell TW; Thomas DL; Vandemaele P; Elgayar S; Oliver-Taylor A; Kirk T; Woods JG; Vos SB; Kuijer JPA; Achten E; van Osch MJP; ; Detre JA; Lu H; Alsop DC; Chappell MA; Hernandez-Garcia L; Petr J; Mutsaerts HJMM Sci Data; 2022 Sep; 9(1):543. PubMed ID: 36068231 [TBL] [Abstract][Full Text] [Related]
20. MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. Appelhoff S; Sanderson M; Brooks TL; van Vliet M; Quentin R; Holdgraf C; Chaumon M; Mikulan E; Tavabi K; Höchenberger R; Welke D; Brunner C; Rockhill AP; Larson E; Gramfort A; Jas M J Open Source Softw; 2019; 4(44):. PubMed ID: 35990374 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]