These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

116 related articles for article (PubMed ID: 34240903)

  • 1. Cross-correlation corrected friction in (generalized) Langevin models.
    Klippenstein V; van der Vegt NFA
    J Chem Phys; 2021 May; 154(19):191102. PubMed ID: 34240903
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Bottom-Up Informed and Iteratively Optimized Coarse-Grained Non-Markovian Water Models with Accurate Dynamics.
    Klippenstein V; van der Vegt NFA
    J Chem Theory Comput; 2023 Feb; 19(4):1099-1110. PubMed ID: 36745567
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Computing the non-Markovian coarse-grained interactions derived from the Mori-Zwanzig formalism in molecular systems: Application to polymer melts.
    Li Z; Lee HS; Darve E; Karniadakis GE
    J Chem Phys; 2017 Jan; 146(1):014104. PubMed ID: 28063444
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The multi-dimensional generalized Langevin equation for conformational motion of proteins.
    Lee HS; Ahn SH; Darve EF
    J Chem Phys; 2019 May; 150(17):174113. PubMed ID: 31067888
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mori-Zwanzig projection operator formalism: Particle-based coarse-grained dynamics of open classical systems far from equilibrium.
    Izvekov S
    Phys Rev E; 2021 Aug; 104(2-1):024121. PubMed ID: 34525637
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Implicit-solvent coarse-grained modeling for polymer solutions via Mori-Zwanzig formalism.
    Wang S; Li Z; Pan W
    Soft Matter; 2019 Oct; 15(38):7567-7582. PubMed ID: 31436282
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Cross-correlation corrected friction in generalized Langevin models: Application to the continuous Asakura-Oosawa model.
    Klippenstein V; van der Vegt NFA
    J Chem Phys; 2022 Jul; 157(4):044103. PubMed ID: 35922348
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Incorporation of memory effects in coarse-grained modeling via the Mori-Zwanzig formalism.
    Li Z; Bian X; Li X; Karniadakis GE
    J Chem Phys; 2015 Dec; 143(24):243128. PubMed ID: 26723613
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Microscopic derivation of coarse-grained, energy-conserving generalized Langevin dynamics.
    Izvekov S
    J Chem Phys; 2019 Sep; 151(10):104109. PubMed ID: 31521077
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Mori-Zwanzig theory for dissipative forces in coarse-grained dynamics in the Markov limit.
    Izvekov S
    Phys Rev E; 2017 Jan; 95(1-1):013303. PubMed ID: 28208451
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Introducing Memory in Coarse-Grained Molecular Simulations.
    Klippenstein V; Tripathy M; Jung G; Schmid F; van der Vegt NFA
    J Phys Chem B; 2021 May; 125(19):4931-4954. PubMed ID: 33982567
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Construction of non-Markovian coarse-grained models employing the Mori-Zwanzig formalism and iterative Boltzmann inversion.
    Yoshimoto Y; Li Z; Kinefuchi I; Karniadakis GE
    J Chem Phys; 2017 Dec; 147(24):244110. PubMed ID: 29289151
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Mori-Zwanzig formalism as a practical computational tool.
    Hijón C; Español P; Vanden-Eijnden E; Delgado-Buscalioni R
    Faraday Discuss; 2010; 144():301-22; discussion 323-45, 467-81. PubMed ID: 20158036
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bottom-up approach to represent dynamic properties in coarse-grained molecular simulations.
    Deichmann G; van der Vegt NFA
    J Chem Phys; 2018 Dec; 149(24):244114. PubMed ID: 30599732
    [TBL] [Abstract][Full Text] [Related]  

  • 15. First-principle approach to rescale the dynamics of simulated coarse-grained macromolecular liquids.
    Lyubimov I; Guenza MG
    Phys Rev E Stat Nonlin Soft Matter Phys; 2011 Sep; 84(3 Pt 1):031801. PubMed ID: 22060394
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Microscopic derivation of particle-based coarse-grained dynamics: Exact expression for memory function.
    Izvekov S
    J Chem Phys; 2017 Mar; 146(12):124109. PubMed ID: 28388110
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Generalized Langevin equation with a nonlinear potential of mean force and nonlinear memory friction from a hybrid projection scheme.
    Ayaz C; Scalfi L; Dalton BA; Netz RR
    Phys Rev E; 2022 May; 105(5-1):054138. PubMed ID: 35706310
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A Mori-Zwanzig Dissipative Particle Dynamics Approach for Anisotropic Coarse Grained Molecular Dynamics.
    Chan KC; Li Z; Wenzel W
    J Chem Theory Comput; 2023 Feb; 19(3):910-923. PubMed ID: 36645752
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A test of systematic coarse-graining of molecular dynamics simulations: Transport properties.
    Fu CC; Kulkarni PM; Shell MS; Leal LG
    J Chem Phys; 2013 Sep; 139(9):094107. PubMed ID: 24028102
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Position-dependent memory kernel in generalized Langevin equations: Theory and numerical estimation.
    Vroylandt H; Monmarché P
    J Chem Phys; 2022 Jun; 156(24):244105. PubMed ID: 35778101
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.