297 related articles for article (PubMed ID: 34245239)
1. DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads.
Li J; Wei L; Zhang X; Zhang W; Wang H; Zhong B; Xie Z; Lv H; Wang X
Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34245239
[TBL] [Abstract][Full Text] [Related]
2. CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data.
Li W; Li Q; Kang S; Same M; Zhou Y; Sun C; Liu CC; Matsuoka L; Sher L; Wong WH; Alber F; Zhou XJ
Nucleic Acids Res; 2018 Sep; 46(15):e89. PubMed ID: 29897492
[TBL] [Abstract][Full Text] [Related]
3. Hypomethylation in HBV integration regions aids non-invasive surveillance to hepatocellular carcinoma by low-pass genome-wide bisulfite sequencing.
Zhang H; Dong P; Guo S; Tao C; Chen W; Zhao W; Wang J; Cheung R; Villanueva A; Fan J; Ding H; Schrodi SJ; Zhang D; Zeng C
BMC Med; 2020 Aug; 18(1):200. PubMed ID: 32741373
[TBL] [Abstract][Full Text] [Related]
4. Comprehensive Whole DNA Methylome Analysis by Integrating MeDIP-seq and MRE-seq.
Xing X; Zhang B; Li D; Wang T
Methods Mol Biol; 2018; 1708():209-246. PubMed ID: 29224147
[TBL] [Abstract][Full Text] [Related]
5. An integrative approach for efficient analysis of whole genome bisulfite sequencing data.
Lee JH; Park SJ; Kenta N
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S14. PubMed ID: 26680746
[TBL] [Abstract][Full Text] [Related]
6. A computational framework to unify orthogonal information in DNA methylation and copy number aberrations in cell-free DNA for early cancer detection.
Wei Q; Jin C; Wang Y; Guo S; Guo X; Liu X; An J; Xing J; Li B
Brief Bioinform; 2022 Jul; 23(4):. PubMed ID: 35649341
[TBL] [Abstract][Full Text] [Related]
7. LiBis: an ultrasensitive alignment augmentation for low-input bisulfite sequencing.
Yin Y; Li J; Li J; Lee M; Zhao S; Guo L; Li J; Zhang M; Huang Y; Li XN; Deng Z; Sun D
Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33316060
[TBL] [Abstract][Full Text] [Related]
8. Prediction of methylation status using WGS data of plasma cfDNA for multi-cancer early detection (MCED).
Cui P; Zhou X; Xu S; He W; Huang G; Xiong Y; Zhang C; Chang T; Feng M; Lai H; Pan Y
Clin Epigenetics; 2024 Feb; 16(1):34. PubMed ID: 38414068
[TBL] [Abstract][Full Text] [Related]
9. Identification of cell type-specific methylation signals in bulk whole genome bisulfite sequencing data.
Scott CA; Duryea JD; MacKay H; Baker MS; Laritsky E; Gunasekara CJ; Coarfa C; Waterland RA
Genome Biol; 2020 Jul; 21(1):156. PubMed ID: 32605651
[TBL] [Abstract][Full Text] [Related]
10. Early detection of hepatocellular carcinoma via no end-repair enzymatic methylation sequencing of cell-free DNA and pre-trained neural network.
Deng Z; Ji Y; Han B; Tan Z; Ren Y; Gao J; Chen N; Ma C; Zhang Y; Yao Y; Lu H; Huang H; Xu M; Chen L; Zheng L; Gu J; Xiong D; Zhao J; Gu J; Chen Z; Wang K
Genome Med; 2023 Nov; 15(1):93. PubMed ID: 37936230
[TBL] [Abstract][Full Text] [Related]
11. High-throughput and affordable genome-wide methylation profiling of circulating cell-free DNA by methylated DNA sequencing (MeD-seq) of LpnPI digested fragments.
Deger T; Boers RG; de Weerd V; Angus L; van der Put MMJ; Boers JB; Azmani Z; van IJcken WFJ; Grünhagen DJ; van Dessel LF; Lolkema MPJK; Verhoef C; Sleijfer S; Martens JWM; Gribnau J; Wilting SM
Clin Epigenetics; 2021 Oct; 13(1):196. PubMed ID: 34670587
[TBL] [Abstract][Full Text] [Related]
12. Comprehensive DNA methylation analysis of tissue of origin of plasma cell-free DNA by methylated CpG tandem amplification and sequencing (MCTA-Seq).
Liu X; Ren J; Luo N; Guo H; Zheng Y; Li J; Tang F; Wen L; Peng J
Clin Epigenetics; 2019 Jun; 11(1):93. PubMed ID: 31234922
[TBL] [Abstract][Full Text] [Related]
13. Liquid Biopsy of Methylation Biomarkers in Cell-Free DNA.
Luo H; Wei W; Ye Z; Zheng J; Xu RH
Trends Mol Med; 2021 May; 27(5):482-500. PubMed ID: 33500194
[TBL] [Abstract][Full Text] [Related]
14. Analysis of genome-wide in cell free DNA methylation: progress and prospect.
Liu Z; Wang Z; Jia E; Ouyang T; Pan M; Lu J; Ge Q; Bai Y
Analyst; 2019 Oct; 144(20):5912-5922. PubMed ID: 31436778
[TBL] [Abstract][Full Text] [Related]
15. Computational challenges in detection of cancer using cell-free DNA methylation.
Sharma M; Verma RK; Kumar S; Kumar V
Comput Struct Biotechnol J; 2022; 20():26-39. PubMed ID: 34976309
[TBL] [Abstract][Full Text] [Related]
16. DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning.
Ni P; Huang N; Zhang Z; Wang DP; Liang F; Miao Y; Xiao CL; Luo F; Wang J
Bioinformatics; 2019 Nov; 35(22):4586-4595. PubMed ID: 30994904
[TBL] [Abstract][Full Text] [Related]
17. Leveraging locus-specific epigenetic heterogeneity to improve the performance of blood-based DNA methylation biomarkers.
Miller BF; Pisanic Ii TR; Margolin G; Petrykowska HM; Athamanolap P; Goncearenco A; Osei-Tutu A; Annunziata CM; Wang TH; Elnitski L
Clin Epigenetics; 2020 Oct; 12(1):154. PubMed ID: 33081832
[TBL] [Abstract][Full Text] [Related]
18. A new approach to epigenome-wide discovery of non-invasive methylation biomarkers for colorectal cancer screening in circulating cell-free DNA using pooled samples.
Gallardo-Gómez M; Moran S; Páez de la Cadena M; Martínez-Zorzano VS; Rodríguez-Berrocal FJ; Rodríguez-Girondo M; Esteller M; Cubiella J; Bujanda L; Castells A; Balaguer F; Jover R; De Chiara L
Clin Epigenetics; 2018; 10():53. PubMed ID: 29686738
[TBL] [Abstract][Full Text] [Related]
19. Whole-Genome Bisulfite Sequencing for the Methylation Analysis of Insect Genomes.
Gatzmann F; Lyko F
Methods Mol Biol; 2019; 1858():141-156. PubMed ID: 30414116
[TBL] [Abstract][Full Text] [Related]
20. Genome-wide cell-free DNA methylation analyses improve accuracy of non-invasive diagnostic imaging for early-stage breast cancer.
Liu J; Zhao H; Huang Y; Xu S; Zhou Y; Zhang W; Li J; Ming Y; Wang X; Zhao S; Li K; Dong X; Ma Y; Qian T; Chen X; Xing Z; Zhang Y; Chen H; Liu Z; Pang D; Zhou M; Wu Z; Wang X; Wang X; Wu N; Su J
Mol Cancer; 2021 Feb; 20(1):36. PubMed ID: 33608029
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]