BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

297 related articles for article (PubMed ID: 34245239)

  • 1. DISMIR: Deep learning-based noninvasive cancer detection by integrating DNA sequence and methylation information of individual cell-free DNA reads.
    Li J; Wei L; Zhang X; Zhang W; Wang H; Zhong B; Xie Z; Lv H; Wang X
    Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34245239
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data.
    Li W; Li Q; Kang S; Same M; Zhou Y; Sun C; Liu CC; Matsuoka L; Sher L; Wong WH; Alber F; Zhou XJ
    Nucleic Acids Res; 2018 Sep; 46(15):e89. PubMed ID: 29897492
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Hypomethylation in HBV integration regions aids non-invasive surveillance to hepatocellular carcinoma by low-pass genome-wide bisulfite sequencing.
    Zhang H; Dong P; Guo S; Tao C; Chen W; Zhao W; Wang J; Cheung R; Villanueva A; Fan J; Ding H; Schrodi SJ; Zhang D; Zeng C
    BMC Med; 2020 Aug; 18(1):200. PubMed ID: 32741373
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Comprehensive Whole DNA Methylome Analysis by Integrating MeDIP-seq and MRE-seq.
    Xing X; Zhang B; Li D; Wang T
    Methods Mol Biol; 2018; 1708():209-246. PubMed ID: 29224147
    [TBL] [Abstract][Full Text] [Related]  

  • 5. An integrative approach for efficient analysis of whole genome bisulfite sequencing data.
    Lee JH; Park SJ; Kenta N
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S14. PubMed ID: 26680746
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A computational framework to unify orthogonal information in DNA methylation and copy number aberrations in cell-free DNA for early cancer detection.
    Wei Q; Jin C; Wang Y; Guo S; Guo X; Liu X; An J; Xing J; Li B
    Brief Bioinform; 2022 Jul; 23(4):. PubMed ID: 35649341
    [TBL] [Abstract][Full Text] [Related]  

  • 7. LiBis: an ultrasensitive alignment augmentation for low-input bisulfite sequencing.
    Yin Y; Li J; Li J; Lee M; Zhao S; Guo L; Li J; Zhang M; Huang Y; Li XN; Deng Z; Sun D
    Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33316060
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Prediction of methylation status using WGS data of plasma cfDNA for multi-cancer early detection (MCED).
    Cui P; Zhou X; Xu S; He W; Huang G; Xiong Y; Zhang C; Chang T; Feng M; Lai H; Pan Y
    Clin Epigenetics; 2024 Feb; 16(1):34. PubMed ID: 38414068
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Identification of cell type-specific methylation signals in bulk whole genome bisulfite sequencing data.
    Scott CA; Duryea JD; MacKay H; Baker MS; Laritsky E; Gunasekara CJ; Coarfa C; Waterland RA
    Genome Biol; 2020 Jul; 21(1):156. PubMed ID: 32605651
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Early detection of hepatocellular carcinoma via no end-repair enzymatic methylation sequencing of cell-free DNA and pre-trained neural network.
    Deng Z; Ji Y; Han B; Tan Z; Ren Y; Gao J; Chen N; Ma C; Zhang Y; Yao Y; Lu H; Huang H; Xu M; Chen L; Zheng L; Gu J; Xiong D; Zhao J; Gu J; Chen Z; Wang K
    Genome Med; 2023 Nov; 15(1):93. PubMed ID: 37936230
    [TBL] [Abstract][Full Text] [Related]  

  • 11. High-throughput and affordable genome-wide methylation profiling of circulating cell-free DNA by methylated DNA sequencing (MeD-seq) of LpnPI digested fragments.
    Deger T; Boers RG; de Weerd V; Angus L; van der Put MMJ; Boers JB; Azmani Z; van IJcken WFJ; Grünhagen DJ; van Dessel LF; Lolkema MPJK; Verhoef C; Sleijfer S; Martens JWM; Gribnau J; Wilting SM
    Clin Epigenetics; 2021 Oct; 13(1):196. PubMed ID: 34670587
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comprehensive DNA methylation analysis of tissue of origin of plasma cell-free DNA by methylated CpG tandem amplification and sequencing (MCTA-Seq).
    Liu X; Ren J; Luo N; Guo H; Zheng Y; Li J; Tang F; Wen L; Peng J
    Clin Epigenetics; 2019 Jun; 11(1):93. PubMed ID: 31234922
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Liquid Biopsy of Methylation Biomarkers in Cell-Free DNA.
    Luo H; Wei W; Ye Z; Zheng J; Xu RH
    Trends Mol Med; 2021 May; 27(5):482-500. PubMed ID: 33500194
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Analysis of genome-wide in cell free DNA methylation: progress and prospect.
    Liu Z; Wang Z; Jia E; Ouyang T; Pan M; Lu J; Ge Q; Bai Y
    Analyst; 2019 Oct; 144(20):5912-5922. PubMed ID: 31436778
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Computational challenges in detection of cancer using cell-free DNA methylation.
    Sharma M; Verma RK; Kumar S; Kumar V
    Comput Struct Biotechnol J; 2022; 20():26-39. PubMed ID: 34976309
    [TBL] [Abstract][Full Text] [Related]  

  • 16. DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning.
    Ni P; Huang N; Zhang Z; Wang DP; Liang F; Miao Y; Xiao CL; Luo F; Wang J
    Bioinformatics; 2019 Nov; 35(22):4586-4595. PubMed ID: 30994904
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Leveraging locus-specific epigenetic heterogeneity to improve the performance of blood-based DNA methylation biomarkers.
    Miller BF; Pisanic Ii TR; Margolin G; Petrykowska HM; Athamanolap P; Goncearenco A; Osei-Tutu A; Annunziata CM; Wang TH; Elnitski L
    Clin Epigenetics; 2020 Oct; 12(1):154. PubMed ID: 33081832
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A new approach to epigenome-wide discovery of non-invasive methylation biomarkers for colorectal cancer screening in circulating cell-free DNA using pooled samples.
    Gallardo-Gómez M; Moran S; Páez de la Cadena M; Martínez-Zorzano VS; Rodríguez-Berrocal FJ; Rodríguez-Girondo M; Esteller M; Cubiella J; Bujanda L; Castells A; Balaguer F; Jover R; De Chiara L
    Clin Epigenetics; 2018; 10():53. PubMed ID: 29686738
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Whole-Genome Bisulfite Sequencing for the Methylation Analysis of Insect Genomes.
    Gatzmann F; Lyko F
    Methods Mol Biol; 2019; 1858():141-156. PubMed ID: 30414116
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome-wide cell-free DNA methylation analyses improve accuracy of non-invasive diagnostic imaging for early-stage breast cancer.
    Liu J; Zhao H; Huang Y; Xu S; Zhou Y; Zhang W; Li J; Ming Y; Wang X; Zhao S; Li K; Dong X; Ma Y; Qian T; Chen X; Xing Z; Zhang Y; Chen H; Liu Z; Pang D; Zhou M; Wu Z; Wang X; Wang X; Wu N; Su J
    Mol Cancer; 2021 Feb; 20(1):36. PubMed ID: 33608029
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.