272 related articles for article (PubMed ID: 34250801)
21. Edge expansion parallel cascade selection molecular dynamics simulation for investigating large-amplitude collective motions of proteins.
Takaba K; Tran DP; Kitao A
J Chem Phys; 2020 Jun; 152(22):225101. PubMed ID: 32534517
[TBL] [Abstract][Full Text] [Related]
22. Probing the electrostatics of active site microenvironments along the catalytic cycle for Escherichia coli dihydrofolate reductase.
Liu CT; Layfield JP; Stewart RJ; French JB; Hanoian P; Asbury JB; Hammes-Schiffer S; Benkovic SJ
J Am Chem Soc; 2014 Jul; 136(29):10349-60. PubMed ID: 24977791
[TBL] [Abstract][Full Text] [Related]
23. Efficient coupling of catalysis and dynamics in the E1 component of Escherichia coli pyruvate dehydrogenase multienzyme complex.
Kale S; Ulas G; Song J; Brudvig GW; Furey W; Jordan F
Proc Natl Acad Sci U S A; 2008 Jan; 105(4):1158-63. PubMed ID: 18216265
[TBL] [Abstract][Full Text] [Related]
24. Role of protein conformational dynamics in the catalysis by 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase.
Yan H; Ji X
Protein Pept Lett; 2011 Apr; 18(4):328-35. PubMed ID: 21222642
[TBL] [Abstract][Full Text] [Related]
25. Role of dynamics in enzyme catalysis: substantial versus semantic controversies.
Kohen A
Acc Chem Res; 2015 Feb; 48(2):466-73. PubMed ID: 25539442
[TBL] [Abstract][Full Text] [Related]
26. Conformational Sub-states and Populations in Enzyme Catalysis.
Agarwal PK; Doucet N; Chennubhotla C; Ramanathan A; Narayanan C
Methods Enzymol; 2016; 578():273-97. PubMed ID: 27497171
[TBL] [Abstract][Full Text] [Related]
27. Conformational compression and barrier height heterogeneity in the N-acetylglutamate kinase.
Sanchez-Martinez M; Marcos E; Tauler R; Field M; Crehuet R
J Phys Chem B; 2013 Nov; 117(46):14261-72. PubMed ID: 24147751
[TBL] [Abstract][Full Text] [Related]
28. Illuminating the mechanistic roles of enzyme conformational dynamics.
Hanson JA; Duderstadt K; Watkins LP; Bhattacharyya S; Brokaw J; Chu JW; Yang H
Proc Natl Acad Sci U S A; 2007 Nov; 104(46):18055-60. PubMed ID: 17989222
[TBL] [Abstract][Full Text] [Related]
29. Minimum free energy path of ligand-induced transition in adenylate kinase.
Matsunaga Y; Fujisaki H; Terada T; Furuta T; Moritsugu K; Kidera A
PLoS Comput Biol; 2012; 8(6):e1002555. PubMed ID: 22685395
[TBL] [Abstract][Full Text] [Related]
30. Conformational selection and induced changes along the catalytic cycle of Escherichia coli dihydrofolate reductase.
Weikl TR; Boehr DD
Proteins; 2012 Oct; 80(10):2369-83. PubMed ID: 22641560
[TBL] [Abstract][Full Text] [Related]
31. Protein Mass-Modulated Effects in Alkaline Phosphatase.
Ghosh AK; Schramm VL
Biochemistry; 2021 Jan; 60(2):118-124. PubMed ID: 33410323
[TBL] [Abstract][Full Text] [Related]
32. Substrate Binding Specifically Modulates Domain Arrangements in Adenylate Kinase.
Zeller F; Zacharias M
Biophys J; 2015 Nov; 109(9):1978-85. PubMed ID: 26536274
[TBL] [Abstract][Full Text] [Related]
33. Modulation of a pre-existing conformational equilibrium tunes adenylate kinase activity.
Ådén J; Verma A; Schug A; Wolf-Watz M
J Am Chem Soc; 2012 Oct; 134(40):16562-70. PubMed ID: 22963267
[TBL] [Abstract][Full Text] [Related]
34. Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray-derived conformational ensembles.
Yabukarski F; Biel JT; Pinney MM; Doukov T; Powers AS; Fraser JS; Herschlag D
Proc Natl Acad Sci U S A; 2020 Dec; 117(52):33204-33215. PubMed ID: 33376217
[TBL] [Abstract][Full Text] [Related]
35. Enzyme dynamics from NMR spectroscopy.
Palmer AG
Acc Chem Res; 2015 Feb; 48(2):457-65. PubMed ID: 25574774
[TBL] [Abstract][Full Text] [Related]
36. A mesoscopic model for protein enzymatic dynamics in solution.
Echeverria C; Togashi Y; Mikhailov AS; Kapral R
Phys Chem Chem Phys; 2011 Jun; 13(22):10527-37. PubMed ID: 21442113
[TBL] [Abstract][Full Text] [Related]
37. Role of water in the enzymatic catalysis: study of ATP + AMP → 2ADP conversion by adenylate kinase.
Adkar BV; Jana B; Bagchi B
J Phys Chem A; 2011 Apr; 115(16):3691-7. PubMed ID: 20836529
[TBL] [Abstract][Full Text] [Related]
38. Energy landscapes associated with macromolecular conformational changes from endpoint structures.
Fornili A; Giabbai B; Garau G; Degano M
J Am Chem Soc; 2010 Dec; 132(49):17570-7. PubMed ID: 21082835
[TBL] [Abstract][Full Text] [Related]
39. X-ray, NMR, and mutational studies of the catalytic cycle of the GDP-mannose mannosyl hydrolase reaction.
Gabelli SB; Azurmendi HF; Bianchet MA; Amzel LM; Mildvan AS
Biochemistry; 2006 Sep; 45(38):11290-303. PubMed ID: 16981689
[TBL] [Abstract][Full Text] [Related]
40. Dynamics of the conformational transitions in the assembling of the Michaelis complex of a bisubstrate enzyme: a (15)N relaxation study of Escherichia coli 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase.
Lescop E; Lu Z; Liu Q; Xu H; Li G; Xia B; Yan H; Jin C
Biochemistry; 2009 Jan; 48(2):302-12. PubMed ID: 19108643
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]