228 related articles for article (PubMed ID: 34251419)
1. Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases.
Staton M; Cannon E; Sanderson LA; Wegrzyn J; Anderson T; Buehler S; Cobo-Simón I; Faaberg K; Grau E; Guignon V; Gunoskey J; Inderski B; Jung S; Lager K; Main D; Poelchau M; Ramnath R; Richter P; West J; Ficklin S
Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34251419
[TBL] [Abstract][Full Text] [Related]
2. Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases.
Spoor S; Wytko C; Soto B; Chen M; Almsaeed A; Condon B; Herndon N; Hough H; Jung S; Staton M; Wegrzyn J; Main D; Feltus FA; Ficklin SP
Database (Oxford); 2020 Jan; 2020():. PubMed ID: 32621602
[TBL] [Abstract][Full Text] [Related]
3. Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.
Spoor S; Cheng CH; Sanderson LA; Condon B; Almsaeed A; Chen M; Bretaudeau A; Rasche H; Jung S; Main D; Bett K; Staton M; Wegrzyn JL; Feltus FA; Ficklin SP
Database (Oxford); 2019 Jan; 2019():. PubMed ID: 31328773
[TBL] [Abstract][Full Text] [Related]
4. Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases.
Sanderson LA; Ficklin SP; Cheng CH; Jung S; Feltus FA; Bett KE; Main D
Database (Oxford); 2013; 2013():bat075. PubMed ID: 24163125
[TBL] [Abstract][Full Text] [Related]
5. Tripal: a construction toolkit for online genome databases.
Ficklin SP; Sanderson LA; Cheng CH; Staton ME; Lee T; Cho IH; Jung S; Bett KE; Main D
Database (Oxford); 2011; 2011():bar044. PubMed ID: 21959868
[TBL] [Abstract][Full Text] [Related]
6. Tripal EUtils: a Tripal module to increase exchange and reuse of genome assembly metadata.
Conford B; Almsaeed A; Buehler S; Childers CP; Ficklin SP; Staton ME; Poelchau MF
Database (Oxford); 2020 Jan; 2019():. PubMed ID: 31960040
[TBL] [Abstract][Full Text] [Related]
7. Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops.
Zheng Y; Wu S; Bai Y; Sun H; Jiao C; Guo S; Zhao K; Blanca J; Zhang Z; Huang S; Xu Y; Weng Y; Mazourek M; K Reddy U; Ando K; McCreight JD; Schaffer AA; Burger J; Tadmor Y; Katzir N; Tang X; Liu Y; Giovannoni JJ; Ling KS; Wechter WP; Levi A; Garcia-Mas J; Grumet R; Fei Z
Nucleic Acids Res; 2019 Jan; 47(D1):D1128-D1136. PubMed ID: 30321383
[TBL] [Abstract][Full Text] [Related]
8. Tripal Developer Toolkit.
Condon B; Almsaeed A; Chen M; West J; Staton M
Database (Oxford); 2018 Jan; 2018():. PubMed ID: 30295719
[TBL] [Abstract][Full Text] [Related]
9. Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps.
Buble K; Jung S; Humann JL; Yu J; Cheng CH; Lee T; Ficklin SP; Hough H; Condon B; Staton ME; Wegrzyn JL; Main D
Database (Oxford); 2019 Jan; 2019():. PubMed ID: 31688940
[TBL] [Abstract][Full Text] [Related]
10. Variant Effect Prediction Analysis Using Resources Available at Gramene Database.
Naithani S; Geniza M; Jaiswal P
Methods Mol Biol; 2017; 1533():279-297. PubMed ID: 27987178
[TBL] [Abstract][Full Text] [Related]
11. Ensembl Plants: Integrating Tools for Visualizing, Mining, and Analyzing Plant Genomic Data.
Bolser DM; Staines DM; Perry E; Kersey PJ
Methods Mol Biol; 2017; 1533():1-31. PubMed ID: 27987162
[TBL] [Abstract][Full Text] [Related]
12. New extension software modules to enhance searching and display of transcriptome data in Tripal databases.
Chen M; Henry N; Almsaeed A; Zhou X; Wegrzyn J; Ficklin S; Staton M
Database (Oxford); 2017 Jan; 2017():. PubMed ID: 29220446
[TBL] [Abstract][Full Text] [Related]
13. Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado.
Jung S; Lee T; Ficklin S; Yu J; Cheng CH; Main D
Database (Oxford); 2016; 2016():. PubMed ID: 26989146
[TBL] [Abstract][Full Text] [Related]
14. Protein Bioinformatics Databases and Resources.
Chen C; Huang H; Wu CH
Methods Mol Biol; 2017; 1558():3-39. PubMed ID: 28150231
[TBL] [Abstract][Full Text] [Related]
15. The Evolution of Soybean Knowledge Base (SoyKB).
Joshi T; Wang J; Zhang H; Chen S; Zeng S; Xu B; Xu D
Methods Mol Biol; 2017; 1533():149-159. PubMed ID: 27987168
[TBL] [Abstract][Full Text] [Related]
16. A PostgreSQL Tripal solution for large-scale genotypic and phenotypic data.
Sanderson LA; Caron CT; Tan RL; Bett KE
Database (Oxford); 2021 Aug; 2021():. PubMed ID: 34389844
[TBL] [Abstract][Full Text] [Related]
17. Plant Reactome: a knowledgebase and resource for comparative pathway analysis.
Naithani S; Gupta P; Preece J; D'Eustachio P; Elser JL; Garg P; Dikeman DA; Kiff J; Cook J; Olson A; Wei S; Tello-Ruiz MK; Mundo AF; Munoz-Pomer A; Mohammed S; Cheng T; Bolton E; Papatheodorou I; Stein L; Ware D; Jaiswal P
Nucleic Acids Res; 2020 Jan; 48(D1):D1093-D1103. PubMed ID: 31680153
[TBL] [Abstract][Full Text] [Related]
18. Genomics and bioinformatics resources for crop improvement.
Mochida K; Shinozaki K
Plant Cell Physiol; 2010 Apr; 51(4):497-523. PubMed ID: 20208064
[TBL] [Abstract][Full Text] [Related]
19. The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.
Cooper L; Meier A; Laporte MA; Elser JL; Mungall C; Sinn BT; Cavaliere D; Carbon S; Dunn NA; Smith B; Qu B; Preece J; Zhang E; Todorovic S; Gkoutos G; Doonan JH; Stevenson DW; Arnaud E; Jaiswal P
Nucleic Acids Res; 2018 Jan; 46(D1):D1168-D1180. PubMed ID: 29186578
[TBL] [Abstract][Full Text] [Related]
20. A Guide to the PLAZA 3.0 Plant Comparative Genomic Database.
Vandepoele K
Methods Mol Biol; 2017; 1533():183-200. PubMed ID: 27987171
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]