These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

190 related articles for article (PubMed ID: 34252923)

  • 21. MetaPhage: an Automated Pipeline for Analyzing, Annotating, and Classifying Bacteriophages in Metagenomics Sequencing Data.
    Pandolfo M; Telatin A; Lazzari G; Adriaenssens EM; Vitulo N
    mSystems; 2022 Oct; 7(5):e0074122. PubMed ID: 36069454
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Isolation of a Host-Confined Phage Metagenome Allows the Detection of Phages Both Capable and Incapable of Plaque Formation.
    Friedrich I; Hertel R
    Methods Mol Biol; 2023; 2555():195-203. PubMed ID: 36306088
    [TBL] [Abstract][Full Text] [Related]  

  • 23. GraphBin: refined binning of metagenomic contigs using assembly graphs.
    Mallawaarachchi V; Wickramarachchi A; Lin Y
    Bioinformatics; 2020 Jun; 36(11):3307-3313. PubMed ID: 32167528
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Gauge your phage: benchmarking of bacteriophage identification tools in metagenomic sequencing data.
    Ho SFS; Wheeler NE; Millard AD; van Schaik W
    Microbiome; 2023 Apr; 11(1):84. PubMed ID: 37085924
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Ecological and functional roles of bacteriophages in contrasting environments: marine, terrestrial and human gut.
    Brown TL; Charity OJ; Adriaenssens EM
    Curr Opin Microbiol; 2022 Dec; 70():102229. PubMed ID: 36347213
    [TBL] [Abstract][Full Text] [Related]  

  • 26. PhaGenus: genus-level classification of bacteriophages using a Transformer model.
    Guan J; Peng C; Shang J; Tang X; Sun Y
    Brief Bioinform; 2023 Sep; 24(6):. PubMed ID: 37965809
    [TBL] [Abstract][Full Text] [Related]  

  • 27. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
    Ren J; Ahlgren NA; Lu YY; Fuhrman JA; Sun F
    Microbiome; 2017 Jul; 5(1):69. PubMed ID: 28683828
    [TBL] [Abstract][Full Text] [Related]  

  • 28. WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs.
    Galiez C; Siebert M; Enault F; Vincent J; Söding J
    Bioinformatics; 2017 Oct; 33(19):3113-3114. PubMed ID: 28957499
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Bacteriophages of the Urinary Microbiome.
    Miller-Ensminger T; Garretto A; Brenner J; Thomas-White K; Zambom A; Wolfe AJ; Putonti C
    J Bacteriol; 2018 Apr; 200(7):. PubMed ID: 29378882
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Computational approaches to predict bacteriophage-host relationships.
    Edwards RA; McNair K; Faust K; Raes J; Dutilh BE
    FEMS Microbiol Rev; 2016 Mar; 40(2):258-72. PubMed ID: 26657537
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations.
    García-López R; Vázquez-Castellanos JF; Moya A
    Front Bioeng Biotechnol; 2015; 3():141. PubMed ID: 26442255
    [TBL] [Abstract][Full Text] [Related]  

  • 32. SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing.
    Pan S; Zhao XM; Coelho LP
    Bioinformatics; 2023 Jun; 39(39 Suppl 1):i21-i29. PubMed ID: 37387171
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Gene Co-occurrence Networks Reflect Bacteriophage Ecology and Evolution.
    Shapiro JW; Putonti C
    mBio; 2018 Mar; 9(2):. PubMed ID: 29559574
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.
    Huson DH; Tappu R; Bazinet AL; Xie C; Cummings MP; Nieselt K; Williams R
    Microbiome; 2017 Jan; 5(1):11. PubMed ID: 28122610
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Metagenomic Analysis of Dairy Bacteriophages: Extraction Method and Pilot Study on Whey Samples Derived from Using Undefined and Defined Mesophilic Starter Cultures.
    Muhammed MK; Kot W; Neve H; Mahony J; Castro-Mejía JL; Krych L; Hansen LH; Nielsen DS; Sørensen SJ; Heller KJ; van Sinderen D; Vogensen FK
    Appl Environ Microbiol; 2017 Oct; 83(19):. PubMed ID: 28754704
    [TBL] [Abstract][Full Text] [Related]  

  • 36. CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model.
    Shang J; Sun Y
    Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35595715
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Identification of bacteriophage genome sequences with representation learning.
    Bai Z; Zhang YZ; Miyano S; Yamaguchi R; Fujimoto K; Uematsu S; Imoto S
    Bioinformatics; 2022 Sep; 38(18):4264-4270. PubMed ID: 35920769
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Identifying Phage Sequences From Metagenomic Data Using Deep Neural Network With Word Embedding and Attention Mechanism.
    Ma L; Deng W; Bai Y; Du Z; Xiao M; Wang L; Li J; Nandi AK
    IEEE/ACM Trans Comput Biol Bioinform; 2023; 20(6):3772-3785. PubMed ID: 37812548
    [TBL] [Abstract][Full Text] [Related]  

  • 39. DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach.
    Wu S; Fang Z; Tan J; Li M; Wang C; Guo Q; Xu C; Jiang X; Zhu H
    Gigascience; 2021 Sep; 10(9):. PubMed ID: 34498685
    [TBL] [Abstract][Full Text] [Related]  

  • 40. DeepHost: phage host prediction with convolutional neural network.
    Ruohan W; Xianglilan Z; Jianping W; Shuai Cheng LI
    Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34553750
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.