BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

161 related articles for article (PubMed ID: 34255819)

  • 1. Probabilistic identification of bacterial essential genes via insertion density using TraDIS data with Tn5 libraries.
    Nlebedim VU; Chaudhuri RR; Walters K
    Bioinformatics; 2021 Dec; 37(23):4343-4349. PubMed ID: 34255819
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The Essential Genome of
    Goodall ECA; Robinson A; Johnston IG; Jabbari S; Turner KA; Cunningham AF; Lund PA; Cole JA; Henderson IR
    mBio; 2018 Feb; 9(1):. PubMed ID: 29463657
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries.
    DeJesus MA; Zhang YJ; Sassetti CM; Rubin EJ; Sacchettini JC; Ioerger TR
    Bioinformatics; 2013 Mar; 29(6):695-703. PubMed ID: 23361328
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Polar Effects of Transposon Insertion into a Minimal Bacterial Genome.
    Hutchison CA; Merryman C; Sun L; Assad-Garcia N; Richter RA; Smith HO; Glass JI
    J Bacteriol; 2019 Oct; 201(19):. PubMed ID: 31262838
    [TBL] [Abstract][Full Text] [Related]  

  • 5. AlbaTraDIS: Comparative analysis of large datasets from parallel transposon mutagenesis experiments.
    Page AJ; Bastkowski S; Yasir M; Turner AK; Le Viet T; Savva GM; Webber MA; Charles IG
    PLoS Comput Biol; 2020 Jul; 16(7):e1007980. PubMed ID: 32678849
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing.
    Choe D; Kim U; Hwang S; Seo SW; Kim D; Cho S; Palsson B; Cho BK
    mSystems; 2023 Feb; 8(1):e0089622. PubMed ID: 36507678
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Genome-Wide Identification by Transposon Insertion Sequencing of Escherichia coli K1 Genes Essential for
    McCarthy AJ; Stabler RA; Taylor PW
    J Bacteriol; 2018 Apr; 200(7):. PubMed ID: 29339415
    [No Abstract]   [Full Text] [Related]  

  • 8. The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries.
    Barquist L; Mayho M; Cummins C; Cain AK; Boinett CJ; Page AJ; Langridge GC; Quail MA; Keane JA; Parkhill J
    Bioinformatics; 2016 Apr; 32(7):1109-11. PubMed ID: 26794317
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Generation of a Tn5 transposon library in Haemophilus parasuis and analysis by transposon-directed insertion-site sequencing (TraDIS).
    Luan SL; Chaudhuri RR; Peters SE; Mayho M; Weinert LA; Crowther SA; Wang J; Langford PR; Rycroft A; Wren BW; Tucker AW; Maskell DJ;
    Vet Microbiol; 2013 Oct; 166(3-4):558-66. PubMed ID: 23928120
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Technical considerations for cost-effective transposon directed insertion-site sequencing (TraDIS).
    Kyono Y; Tolwinski M; Flowers SA
    Sci Rep; 2024 Mar; 14(1):6756. PubMed ID: 38514891
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Model-based identification of conditionally-essential genes from transposon-insertion sequencing data.
    Sarsani V; Aldikacti B; He S; Zeinert R; Chien P; Flaherty P
    PLoS Comput Biol; 2022 Mar; 18(3):e1009273. PubMed ID: 35255084
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Analysis of Escherichia coli K1 Virulence Genes by Transposon-Directed Sequencing.
    McCarthy AJ; Taylor PW
    Methods Mol Biol; 2022; 2377():199-213. PubMed ID: 34709618
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Genome-wide sequence transposon insertion sites and analyze the essential genes of Brucella melitensis.
    De Y; Dong C; Cao Y; Wang X; Yang X; Wang N; Zhang C; Wang Z; Lyu Y; Wu Q
    Microb Pathog; 2017 Nov; 112():97-102. PubMed ID: 28888882
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Reproducible and accessible analysis of transposon insertion sequencing in Galaxy for qualitative essentiality analyses.
    Larivière D; Wickham L; Keiler K; Nekrutenko A;
    BMC Microbiol; 2021 Jun; 21(1):168. PubMed ID: 34090324
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ESSENTIALS: software for rapid analysis of high throughput transposon insertion sequencing data.
    Zomer A; Burghout P; Bootsma HJ; Hermans PW; van Hijum SA
    PLoS One; 2012; 7(8):e43012. PubMed ID: 22900082
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Precise excision of bacterial transposon Tn5 in yeast.
    Gordenin DA; Trofimova MV; Shaburova ON; Pavlov YI; Chernoff YO; Chekuolene YV; Proscyavichus YY; Sasnauskas KV; Janulaitis AA
    Mol Gen Genet; 1988 Aug; 213(2-3):388-93. PubMed ID: 2847007
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Elucidating Essential Genes in Plant-Associated Pseudomonas protegens Pf-5 Using Transposon Insertion Sequencing.
    Fabian BK; Foster C; Asher AJ; Elbourne LDH; Cain AK; Hassan KA; Tetu SG; Paulsen IT
    J Bacteriol; 2021 Mar; 203(7):. PubMed ID: 33257523
    [TBL] [Abstract][Full Text] [Related]  

  • 18. TraDIS-Xpress: a high-resolution whole-genome assay identifies novel mechanisms of triclosan action and resistance.
    Yasir M; Turner AK; Bastkowski S; Baker D; Page AJ; Telatin A; Phan MD; Monahan L; Savva GM; Darling A; Webber MA; Charles IG
    Genome Res; 2020 Feb; 30(2):239-249. PubMed ID: 32051187
    [TBL] [Abstract][Full Text] [Related]  

  • 19. High-resolution definition of the Vibrio cholerae essential gene set with hidden Markov model-based analyses of transposon-insertion sequencing data.
    Chao MC; Pritchard JR; Zhang YJ; Rubin EJ; Livny J; Davis BM; Waldor MK
    Nucleic Acids Res; 2013 Oct; 41(19):9033-48. PubMed ID: 23901011
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Rationally designed
    Bossé JT; Li Y; Leanse LG; Zhou L; Chaudhuri RR; Peters SE; Wang J; Maglennon GA; Holden MTG; Maskell DJ; Tucker AW; Wren BW; Rycroft AN; Langford PR;
    Anim Dis; 2021; 1(1):29. PubMed ID: 34870287
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.