135 related articles for article (PubMed ID: 34270680)
1. Nanopanel2 calls phased low-frequency variants in Nanopore panel sequencing data.
Popitsch N; Preuner S; Lion T
Bioinformatics; 2021 Dec; 37(24):4620-4625. PubMed ID: 34270680
[TBL] [Abstract][Full Text] [Related]
2. NanoSNP: a progressive and haplotype-aware SNP caller on low-coverage nanopore sequencing data.
Huang N; Xu M; Nie F; Ni P; Xiao CL; Luo F; Wang J
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36548365
[TBL] [Abstract][Full Text] [Related]
3. A Long-Read Sequencing Approach for Direct Haplotype Phasing in Clinical Settings.
Maestri S; Maturo MG; Cosentino E; Marcolungo L; Iadarola B; Fortunati E; Rossato M; Delledonne M
Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271988
[TBL] [Abstract][Full Text] [Related]
4. BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files.
Payne A; Holmes N; Rakyan V; Loose M
Bioinformatics; 2019 Jul; 35(13):2193-2198. PubMed ID: 30462145
[TBL] [Abstract][Full Text] [Related]
5. Using genotype array data to compare multi- and single-sample variant calls and improve variant call sets from deep coverage whole-genome sequencing data.
Shringarpure SS; Mathias RA; Hernandez RD; O'Connor TD; Szpiech ZA; Torres R; De La Vega FM; Bustamante CD; Barnes KC; Taub MA;
Bioinformatics; 2017 Apr; 33(8):1147-1153. PubMed ID: 28035032
[TBL] [Abstract][Full Text] [Related]
6. Benchmarking Low-Frequency Variant Calling With Long-Read Data on Mitochondrial DNA.
Lüth T; Schaake S; Grünewald A; May P; Trinh J; Weissensteiner H
Front Genet; 2022; 13():887644. PubMed ID: 35664331
[No Abstract] [Full Text] [Related]
7. neoepiscope improves neoepitope prediction with multivariant phasing.
Wood MA; Nguyen A; Struck AJ; Ellrott K; Nellore A; Thompson RF
Bioinformatics; 2020 Feb; 36(3):713-720. PubMed ID: 31424527
[TBL] [Abstract][Full Text] [Related]
8. SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing.
Rozhoňová H; Danciu D; Stark S; Rätsch G; Kahles A; Lehmann KV
Bioinformatics; 2022 Sep; 38(18):4293-4300. PubMed ID: 35900151
[TBL] [Abstract][Full Text] [Related]
9. Clair3-trio: high-performance Nanopore long-read variant calling in family trios with trio-to-trio deep neural networks.
Su J; Zheng Z; Ahmed SS; Lam TW; Luo R
Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35849103
[TBL] [Abstract][Full Text] [Related]
10. NanoSplicer: accurate identification of splice junctions using Oxford Nanopore sequencing.
You Y; Clark MB; Shim H
Bioinformatics; 2022 Aug; 38(15):3741-3748. PubMed ID: 35639973
[TBL] [Abstract][Full Text] [Related]
11. ReliableGenome: annotation of genomic regions with high/low variant calling concordance.
Popitsch N; ; Schuh A; Taylor JC
Bioinformatics; 2017 Jan; 33(2):155-160. PubMed ID: 27605105
[TBL] [Abstract][Full Text] [Related]
12. SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA.
Kockan C; Hach F; Sarrafi I; Bell RH; McConeghy B; Beja K; Haegert A; Wyatt AW; Volik SV; Chi KN; Collins CC; Sahinalp SC
Bioinformatics; 2017 Jan; 33(1):26-34. PubMed ID: 27531099
[TBL] [Abstract][Full Text] [Related]
13. Haplotype phasing in single-cell DNA-sequencing data.
Satas G; Raphael BJ
Bioinformatics; 2018 Jul; 34(13):i211-i217. PubMed ID: 29950014
[TBL] [Abstract][Full Text] [Related]
14. Novel algorithms for efficient subsequence searching and mapping in nanopore raw signals towards targeted sequencing.
Han R; Wang S; Gao X
Bioinformatics; 2020 Mar; 36(5):1333-1343. PubMed ID: 31593235
[TBL] [Abstract][Full Text] [Related]
15. PyPore: a python toolbox for nanopore sequencing data handling.
Semeraro R; Magi A
Bioinformatics; 2019 Nov; 35(21):4445-4447. PubMed ID: 30993318
[TBL] [Abstract][Full Text] [Related]
16. DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data.
Bonet J; Chen M; Dabad M; Heath S; Gonzalez-Perez A; Lopez-Bigas N; Lagergren J
Bioinformatics; 2022 Feb; 38(5):1235-1243. PubMed ID: 34718417
[TBL] [Abstract][Full Text] [Related]
17. Improvement of large copy number variant detection by whole genome nanopore sequencing.
Cuenca-Guardiola J; de la Morena-Barrio B; García JL; Sanchis-Juan A; Corral J; Fernández-Breis JT
J Adv Res; 2023 Aug; 50():145-158. PubMed ID: 36323370
[TBL] [Abstract][Full Text] [Related]
18. Duet: SNP-assisted structural variant calling and phasing using Oxford nanopore sequencing.
Zhou Y; Leung AW; Ahmed SS; Lam TW; Luo R
BMC Bioinformatics; 2022 Nov; 23(1):465. PubMed ID: 36344913
[TBL] [Abstract][Full Text] [Related]
19. ReadBouncer: precise and scalable adaptive sampling for nanopore sequencing.
Ulrich JU; Lutfi A; Rutzen K; Renard BY
Bioinformatics; 2022 Jun; 38(Suppl 1):i153-i160. PubMed ID: 35758774
[TBL] [Abstract][Full Text] [Related]
20. Halcyon: an accurate basecaller exploiting an encoder-decoder model with monotonic attention.
Konishi H; Yamaguchi R; Yamaguchi K; Furukawa Y; Imoto S
Bioinformatics; 2021 Jun; 37(9):1211-1217. PubMed ID: 33165508
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
