BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

136 related articles for article (PubMed ID: 34270680)

  • 21. LongPhase: an ultra-fast chromosome-scale phasing algorithm for small and large variants.
    Lin JH; Chen LC; Yu SC; Huang YT
    Bioinformatics; 2022 Mar; 38(7):1816-1822. PubMed ID: 35104333
    [TBL] [Abstract][Full Text] [Related]  

  • 22. smCounter2: an accurate low-frequency variant caller for targeted sequencing data with unique molecular identifiers.
    Xu C; Gu X; Padmanabhan R; Wu Z; Peng Q; DiCarlo J; Wang Y
    Bioinformatics; 2019 Apr; 35(8):1299-1309. PubMed ID: 30192920
    [TBL] [Abstract][Full Text] [Related]  

  • 23. NanoCLUST: a species-level analysis of 16S rRNA nanopore sequencing data.
    Rodríguez-Pérez H; Ciuffreda L; Flores C
    Bioinformatics; 2021 Jul; 37(11):1600-1601. PubMed ID: 33079990
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Preclinical workup using long-read amplicon sequencing provides families with de novo pathogenic variants access to universal preimplantation genetic testing.
    Tsuiko O; El Ayeb Y; Jatsenko T; Allemeersch J; Melotte C; Ding J; Debrock S; Peeraer K; Vanhie A; De Leener A; Pirard C; Kluyskens C; Denayer E; Legius E; Vermeesch JR; Brems H; Dimitriadou E
    Hum Reprod; 2023 Mar; 38(3):511-519. PubMed ID: 36625546
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Nanopore base calling on the edge.
    Perešíni P; Boža V; Brejová B; Vinař T
    Bioinformatics; 2021 Dec; 37(24):4661-4667. PubMed ID: 34314502
    [TBL] [Abstract][Full Text] [Related]  

  • 26. GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads.
    Dishuck PC; Rozanski AN; Logsdon GA; Porubsky D; Eichler EE
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36321867
    [TBL] [Abstract][Full Text] [Related]  

  • 27. MsPAC: a tool for haplotype-phased structural variant detection.
    Rodriguez OL; Ritz A; Sharp AJ; Bashir A
    Bioinformatics; 2020 Feb; 36(3):922-924. PubMed ID: 31397844
    [TBL] [Abstract][Full Text] [Related]  

  • 28. PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylation.
    Mahmoud M; Doddapaneni H; Timp W; Sedlazeck FJ
    Genome Biol; 2021 Sep; 22(1):268. PubMed ID: 34521442
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data.
    Dunn T; Berry G; Emig-Agius D; Jiang Y; Lei S; Iyer A; Udar N; Chuang HY; Hegarty J; Dickover M; Klotzle B; Robbins J; Bibikova M; Peeters M; Strömberg M
    Bioinformatics; 2019 May; 35(9):1579-1581. PubMed ID: 30304370
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts.
    Ding H; Bailey AD; Jain M; Olsen H; Paten B
    Bioinformatics; 2020 Dec; 36(19):4928-4934. PubMed ID: 32597959
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Nanopype: a modular and scalable nanopore data processing pipeline.
    Giesselmann P; Hetzel S; Müller FJ; Meissner A; Kretzmer H
    Bioinformatics; 2019 Nov; 35(22):4770-4772. PubMed ID: 31192347
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Samovar: Single-Sample Mosaic Single-Nucleotide Variant Calling with Linked Reads.
    Darby CA; Fitch JR; Brennan PJ; Kelly BJ; Bir N; Magrini V; Leonard J; Cottrell CE; Gastier-Foster JM; Wilson RK; Mardis ER; White P; Langmead B; Schatz MC
    iScience; 2019 Aug; 18():1-10. PubMed ID: 31271967
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications.
    Chen X; Schulz-Trieglaff O; Shaw R; Barnes B; Schlesinger F; Källberg M; Cox AJ; Kruglyak S; Saunders CT
    Bioinformatics; 2016 Apr; 32(8):1220-2. PubMed ID: 26647377
    [TBL] [Abstract][Full Text] [Related]  

  • 34. A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing.
    Ahsan MU; Gouru A; Chan J; Zhou W; Wang K
    Nat Commun; 2024 Feb; 15(1):1448. PubMed ID: 38365920
    [TBL] [Abstract][Full Text] [Related]  

  • 35. trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios.
    Miller DB; Piccolo SR
    BMC Bioinformatics; 2021 Nov; 22(1):559. PubMed ID: 34809557
    [TBL] [Abstract][Full Text] [Related]  

  • 36. lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.
    Haghshenas E; Sahinalp SC; Hach F
    Bioinformatics; 2019 Jan; 35(1):20-27. PubMed ID: 30561550
    [TBL] [Abstract][Full Text] [Related]  

  • 37. DeepNano-blitz: a fast base caller for MinION nanopore sequencers.
    Boža V; Perešíni P; Brejová B; Vinař T
    Bioinformatics; 2020 Aug; 36(14):4191-4192. PubMed ID: 32374816
    [TBL] [Abstract][Full Text] [Related]  

  • 38. SVIM: structural variant identification using mapped long reads.
    Heller D; Vingron M
    Bioinformatics; 2019 Sep; 35(17):2907-2915. PubMed ID: 30668829
    [TBL] [Abstract][Full Text] [Related]  

  • 39. DNAscent v2: detecting replication forks in nanopore sequencing data with deep learning.
    Boemo MA
    BMC Genomics; 2021 Jun; 22(1):430. PubMed ID: 34107894
    [TBL] [Abstract][Full Text] [Related]  

  • 40. MSRCall: a multi-scale deep neural network to basecall Oxford Nanopore sequences.
    Yeh YM; Lu YC
    Bioinformatics; 2022 Aug; 38(16):3877-3884. PubMed ID: 35766808
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.