BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

381 related articles for article (PubMed ID: 34273560)

  • 1. AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-seq Data Analysis.
    Liu S; Li D; Lyu C; Gontarz PM; Miao B; Madden PAF; Wang T; Zhang B
    Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):641-651. PubMed ID: 34273560
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data.
    Ou J; Liu H; Yu J; Kelliher MA; Castilla LH; Lawson ND; Zhu LJ
    BMC Genomics; 2018 Mar; 19(1):169. PubMed ID: 29490630
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
    Orchard P; Kyono Y; Hensley J; Kitzman JO; Parker SCJ
    Cell Syst; 2020 Mar; 10(3):298-306.e4. PubMed ID: 32213349
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ATAC-DEA: A Web-Based ATAC-Seq Data Differential Peak and Annotation Analysis Application.
    Zhang S; Wang S
    J Comput Biol; 2023 Mar; 30(3):337-345. PubMed ID: 36656543
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Analytical Approaches for ATAC-seq Data Analysis.
    Smith JP; Sheffield NC
    Curr Protoc Hum Genet; 2020 Jun; 106(1):e101. PubMed ID: 32543102
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Optimized assay for transposase-accessible chromatin by sequencing (ATAC-seq) library preparation from adult Drosophila melanogaster neurons.
    Merrill CB; Pabon MA; Montgomery AB; Rodan AR; Rothenfluh A
    Sci Rep; 2022 Apr; 12(1):6043. PubMed ID: 35411004
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Chromatin accessibility profiling by ATAC-seq.
    Grandi FC; Modi H; Kampman L; Corces MR
    Nat Protoc; 2022 Jun; 17(6):1518-1552. PubMed ID: 35478247
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis.
    Qiu X; Feit AS; Feiglin A; Xie Y; Kesten N; Taing L; Perkins J; Gu S; Li Y; Cejas P; Zhou N; Jeselsohn R; Brown M; Shirley Liu X; Long HW
    Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):652-661. PubMed ID: 34284136
    [TBL] [Abstract][Full Text] [Related]  

  • 9. ATAC-seq Data Processing.
    Kim DS
    Methods Mol Biol; 2023; 2611():305-323. PubMed ID: 36807076
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ATAC-Seq Analysis of Accessible Chromatin: From Experimental Steps to Data Analysis.
    Tatara M; Ikeda T; Namekawa SH; Maezawa S
    Methods Mol Biol; 2023; 2577():65-81. PubMed ID: 36173566
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads.
    De Rop FV; Ismail JN; Bravo González-Blas C; Hulselmans GJ; Flerin CC; Janssens J; Theunis K; Christiaens VM; Wouters J; Marcassa G; de Wit J; Poovathingal S; Aerts S
    Elife; 2022 Feb; 11():. PubMed ID: 35195064
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Optimization of ATAC-seq in wheat seedling roots using INTACT-isolated nuclei.
    Debernardi JM; Burguener G; Bubb K; Liu Q; Queitsch C; Dubcovsky J
    BMC Plant Biol; 2023 May; 23(1):270. PubMed ID: 37211599
    [TBL] [Abstract][Full Text] [Related]  

  • 13. maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.
    Cazares TA; Rizvi FW; Iyer B; Chen X; Kotliar M; Bejjani AT; Wayman JA; Donmez O; Wronowski B; Parameswaran S; Kottyan LC; Barski A; Weirauch MT; Prasath VBS; Miraldi ER
    PLoS Comput Biol; 2023 Jan; 19(1):e1010863. PubMed ID: 36719906
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Comparison of differential accessibility analysis strategies for ATAC-seq data.
    Gontarz P; Fu S; Xing X; Liu S; Miao B; Bazylianska V; Sharma A; Madden P; Cates K; Yoo A; Moszczynska A; Wang T; Zhang B
    Sci Rep; 2020 Jun; 10(1):10150. PubMed ID: 32576878
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Measuring Chromatin Accessibility: ATAC-Seq.
    Sahu SK; Basu A; Tiwari VK
    Methods Mol Biol; 2021; 2351():105-121. PubMed ID: 34382186
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ATAC-seq with unique molecular identifiers improves quantification and footprinting.
    Zhu T; Liao K; Zhou R; Xia C; Xie W
    Commun Biol; 2020 Nov; 3(1):675. PubMed ID: 33188264
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Assay for Transposase-Accessible Chromatin Using Sequencing (ATAC-seq) Data Analysis.
    Miskimen KLS; Chan ER; Haines JL
    Curr Protoc Hum Genet; 2017 Jan; 92():20.4.1-20.4.13. PubMed ID: 28075484
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Interrogating the Accessible Chromatin Landscape of Eukaryote Genomes Using ATAC-seq.
    Marinov GK; Shipony Z
    Methods Mol Biol; 2021; 2243():183-226. PubMed ID: 33606259
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ATAC-seq Optimization for Cancer Epigenetics Research.
    Cooper M; Ray A; Bhattacharya A; Dhasarathy A; Takaku M
    J Vis Exp; 2022 Jun; (184):. PubMed ID: 35848835
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Epigenetic Application of ATAC-Seq Based on Tn5 Transposase Purification Technology.
    Li W; Tim Wu U; Cheng Y; Huang Y; Mao L; Sun M; Qiu C; Zhou L; Gao L
    Genet Res (Camb); 2022; 2022():8429207. PubMed ID: 36062065
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.