These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

153 related articles for article (PubMed ID: 34274894)

  • 21. STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow.
    Saggese I; Bona E; Conway M; Favero F; Ladetto M; Liò P; Manzini G; Mignone F
    BMC Bioinformatics; 2018 Jul; 19(Suppl 7):184. PubMed ID: 30066630
    [TBL] [Abstract][Full Text] [Related]  

  • 22. FRAMA: from RNA-seq data to annotated mRNA assemblies.
    Bens M; Sahm A; Groth M; Jahn N; Morhart M; Holtze S; Hildebrandt TB; Platzer M; Szafranski K
    BMC Genomics; 2016 Jan; 17():54. PubMed ID: 26763976
    [TBL] [Abstract][Full Text] [Related]  

  • 23. NSMAP: a method for spliced isoforms identification and quantification from RNA-Seq.
    Xia Z; Wen J; Chang CC; Zhou X
    BMC Bioinformatics; 2011 May; 12():162. PubMed ID: 21575225
    [TBL] [Abstract][Full Text] [Related]  

  • 24. CAARS: comparative assembly and annotation of RNA-Seq data.
    Rey C; Veber P; Boussau B; Sémon M
    Bioinformatics; 2019 Jul; 35(13):2199-2207. PubMed ID: 30452539
    [TBL] [Abstract][Full Text] [Related]  

  • 25. IsoLasso: a LASSO regression approach to RNA-Seq based transcriptome assembly.
    Li W; Feng J; Jiang T
    J Comput Biol; 2011 Nov; 18(11):1693-707. PubMed ID: 21951053
    [TBL] [Abstract][Full Text] [Related]  

  • 26. RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes.
    Nip KM; Chiu R; Yang C; Chu J; Mohamadi H; Warren RL; Birol I
    Genome Res; 2020 Aug; 30(8):1191-1200. PubMed ID: 32817073
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data.
    Sarkar H; Srivastava A; Bravo HC; Love MI; Patro R
    Bioinformatics; 2020 Jul; 36(Suppl_1):i102-i110. PubMed ID: 32657377
    [TBL] [Abstract][Full Text] [Related]  

  • 28. A mixture model for expression deconvolution from RNA-seq in heterogeneous tissues.
    Li Y; Xie X
    BMC Bioinformatics; 2013; 14 Suppl 5(Suppl 5):S11. PubMed ID: 23735186
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Updating RNA-Seq analyses after re-annotation.
    Roberts A; Schaeffer L; Pachter L
    Bioinformatics; 2013 Jul; 29(13):1631-7. PubMed ID: 23677943
    [TBL] [Abstract][Full Text] [Related]  

  • 30. RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes.
    Srivastava A; Sarkar H; Gupta N; Patro R
    Bioinformatics; 2016 Jun; 32(12):i192-i200. PubMed ID: 27307617
    [TBL] [Abstract][Full Text] [Related]  

  • 31. ChimeRScope: a novel alignment-free algorithm for fusion transcript prediction using paired-end RNA-Seq data.
    Li Y; Heavican TB; Vellichirammal NN; Iqbal J; Guda C
    Nucleic Acids Res; 2017 Jul; 45(13):e120. PubMed ID: 28472320
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A robust method for transcript quantification with RNA-seq data.
    Huang Y; Hu Y; Jones CD; MacLeod JN; Chiang DY; Liu Y; Prins JF; Liu J
    J Comput Biol; 2013 Mar; 20(3):167-87. PubMed ID: 23461570
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Mapping RNA-seq reads to transcriptomes efficiently based on learning to hash method.
    Yu X; Liu X
    Comput Biol Med; 2020 Jan; 116():103539. PubMed ID: 31765913
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations.
    Mangul S; Caciula A; Glebova O; Mandoiu I; Zelikovsky A
    In Silico Biol; 2011-2012; 11(5-6):251-61. PubMed ID: 23202426
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation.
    Li JJ; Jiang CR; Brown JB; Huang H; Bickel PJ
    Proc Natl Acad Sci U S A; 2011 Dec; 108(50):19867-72. PubMed ID: 22135461
    [TBL] [Abstract][Full Text] [Related]  

  • 36. TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads.
    Nariai N; Kojima K; Mimori T; Sato Y; Kawai Y; Yamaguchi-Kabata Y; Nagasaki M
    BMC Genomics; 2014; 15 Suppl 10(Suppl 10):S5. PubMed ID: 25560536
    [TBL] [Abstract][Full Text] [Related]  

  • 37. TransComb: genome-guided transcriptome assembly via combing junctions in splicing graphs.
    Liu J; Yu T; Jiang T; Li G
    Genome Biol; 2016 Oct; 17(1):213. PubMed ID: 27760567
    [TBL] [Abstract][Full Text] [Related]  

  • 38. RNA-Seq Data Analysis Pipeline for Plants: Transcriptome Assembly, Alignment, and Differential Expression Analysis.
    Burks DJ; Azad RK
    Methods Mol Biol; 2022; 2396():47-60. PubMed ID: 34786675
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Strawberry: Fast and accurate genome-guided transcript reconstruction and quantification from RNA-Seq.
    Liu R; Dickerson J
    PLoS Comput Biol; 2017 Nov; 13(11):e1005851. PubMed ID: 29176847
    [TBL] [Abstract][Full Text] [Related]  

  • 40. IsoformEx: isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data.
    Kim H; Bi Y; Pal S; Gupta R; Davuluri RV
    BMC Bioinformatics; 2011 Jul; 12():305. PubMed ID: 21794104
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.