291 related articles for article (PubMed ID: 34282334)
1. A plate-based single-cell ATAC-seq workflow for fast and robust profiling of chromatin accessibility.
Xu W; Wen Y; Liang Y; Xu Q; Wang X; Jin W; Chen X
Nat Protoc; 2021 Aug; 16(8):4084-4107. PubMed ID: 34282334
[TBL] [Abstract][Full Text] [Related]
2. Profiling single-cell chromatin accessibility in plants.
Marand AP; Zhang X; Nelson J; Braga Dos Reis PA; Schmitz RJ
STAR Protoc; 2021 Sep; 2(3):100737. PubMed ID: 34430912
[TBL] [Abstract][Full Text] [Related]
3. Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads.
De Rop FV; Ismail JN; Bravo González-Blas C; Hulselmans GJ; Flerin CC; Janssens J; Theunis K; Christiaens VM; Wouters J; Marcassa G; de Wit J; Poovathingal S; Aerts S
Elife; 2022 Feb; 11():. PubMed ID: 35195064
[TBL] [Abstract][Full Text] [Related]
4. A rapid and robust method for single cell chromatin accessibility profiling.
Chen X; Miragaia RJ; Natarajan KN; Teichmann SA
Nat Commun; 2018 Dec; 9(1):5345. PubMed ID: 30559361
[TBL] [Abstract][Full Text] [Related]
5. Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation.
Henikoff S; Henikoff JG; Kaya-Okur HS; Ahmad K
Elife; 2020 Nov; 9():. PubMed ID: 33191916
[TBL] [Abstract][Full Text] [Related]
6. Chromatin accessibility profiling by ATAC-seq.
Grandi FC; Modi H; Kampman L; Corces MR
Nat Protoc; 2022 Jun; 17(6):1518-1552. PubMed ID: 35478247
[TBL] [Abstract][Full Text] [Related]
7. simATAC: a single-cell ATAC-seq simulation framework.
Navidi Z; Zhang L; Wang B
Genome Biol; 2021 Mar; 22(1):74. PubMed ID: 33663563
[TBL] [Abstract][Full Text] [Related]
8. Adipocyte-Specific ATAC-Seq with Adipose Tissues Using Fluorescence-Activated Nucleus Sorting.
Kim K; Taleb S; So J; Wann J; Cheol Roh H
J Vis Exp; 2023 Mar; (193):. PubMed ID: 37010301
[TBL] [Abstract][Full Text] [Related]
9. Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.
Halstead MM; Kern C; Saelao P; Chanthavixay G; Wang Y; Delany ME; Zhou H; Ross PJ
Sci Rep; 2020 Mar; 10(1):5230. PubMed ID: 32251359
[TBL] [Abstract][Full Text] [Related]
10. Discovering single nucleotide variants and indels from bulk and single-cell ATAC-seq.
Massarat AR; Sen A; Jaureguy J; Tyndale ST; Fu Y; Erikson G; McVicker G
Nucleic Acids Res; 2021 Aug; 49(14):7986-7994. PubMed ID: 34313779
[TBL] [Abstract][Full Text] [Related]
11. Multiplexed Analysis of Retinal Gene Expression and Chromatin Accessibility using scRNA-Seq and scATAC-Seq.
Weir K; Leavey P; Santiago C; Blackshaw S
J Vis Exp; 2021 Mar; (169):. PubMed ID: 33779599
[TBL] [Abstract][Full Text] [Related]
12. Cell type-specific chromatin accessibility analysis in the mouse and human brain.
Rocks D; Jaric I; Tesfa L; Greally JM; Suzuki M; Kundakovic M
Epigenetics; 2022; 17(2):202-219. PubMed ID: 33775205
[TBL] [Abstract][Full Text] [Related]
13. From reads to insight: a hitchhiker's guide to ATAC-seq data analysis.
Yan F; Powell DR; Curtis DJ; Wong NC
Genome Biol; 2020 Feb; 21(1):22. PubMed ID: 32014034
[TBL] [Abstract][Full Text] [Related]
14. Single-Nucleus ATAC-seq for Mapping Chromatin Accessibility in Individual Cells of Murine Hearts.
Yekelchyk M; Li X; Guenther S; Braun T
Methods Mol Biol; 2024; 2752():245-257. PubMed ID: 38194039
[TBL] [Abstract][Full Text] [Related]
15. [Advances in assay for transposase-accessible chromatin with high-throughput sequencing].
Wu J; Quan JP; Ye Y; Wu ZF; Yang J; Yang M; Zheng EQ
Yi Chuan; 2020 Apr; 42(4):333-346. PubMed ID: 32312702
[TBL] [Abstract][Full Text] [Related]
16. An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies.
Bera BS; Thompson TV; Sosa E; Nomaru H; Reynolds D; Dubin RA; Maqbool SB; Zheng D; Morrow BE; Greally JM; Suzuki M
Epigenetics Chromatin; 2023 Apr; 16(1):14. PubMed ID: 37118773
[TBL] [Abstract][Full Text] [Related]
17. FACS-based isolation of fixed mouse neuronal nuclei for ATAC-seq and Hi-C.
Eremenko E; Golova A; Stein D; Einav M; Khrameeva E; Toiber D
STAR Protoc; 2021 Sep; 2(3):100643. PubMed ID: 34308377
[TBL] [Abstract][Full Text] [Related]
18. ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation.
Reske JJ; Wilson MR; Chandler RL
Epigenetics Chromatin; 2020 Apr; 13(1):22. PubMed ID: 32321567
[TBL] [Abstract][Full Text] [Related]
19. A Unified Deep Learning Framework for Single-Cell ATAC-Seq Analysis Based on ProdDep Transformer Encoder.
Wang Z; Zhang Y; Yu Y; Zhang J; Liu Y; Zou Q
Int J Mol Sci; 2023 Mar; 24(5):. PubMed ID: 36902216
[TBL] [Abstract][Full Text] [Related]
20. Exploring Chromatin Accessibility in Mouse Epiblast Stem Cells with ATAC-Seq.
Salehin N; Santucci N; Osteil P; Tam PPL
Methods Mol Biol; 2022; 2490():93-100. PubMed ID: 35486242
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]