BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

172 related articles for article (PubMed ID: 34289030)

  • 1. Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data.
    Lei H; Gertz EM; Schäffer AA; Fu X; Tao Y; Heselmeyer-Haddad K; Torres I; Li G; Xu L; Hou Y; Wu K; Shi X; Dean M; Ried T; Schwartz R
    Bioinformatics; 2021 Dec; 37(24):4704-4711. PubMed ID: 34289030
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Joint Clustering of Single-Cell Sequencing and Fluorescence In Situ Hybridization Data for Reconstructing Clonal Heterogeneity in Cancers.
    Fu X; Lei H; Tao Y; Heselmeyer-Haddad K; Torres I; Dean M; Ried T; Schwartz R
    J Comput Biol; 2021 Nov; 28(11):1035-1051. PubMed ID: 34612714
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Reconstructing tumor clonal lineage trees incorporating single-nucleotide variants, copy number alterations and structural variations.
    Fu X; Lei H; Tao Y; Schwartz R
    Bioinformatics; 2022 Jun; 38(Suppl 1):i125-i133. PubMed ID: 35758777
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data.
    Lei H; Lyu B; Gertz EM; Schäffer AA; Shi X; Wu K; Li G; Xu L; Hou Y; Dean M; Schwartz R
    J Comput Biol; 2020 Apr; 27(4):565-598. PubMed ID: 32181683
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Deconvolution and phylogeny inference of structural variations in tumor genomic samples.
    Eaton J; Wang J; Schwartz R
    Bioinformatics; 2018 Jul; 34(13):i357-i365. PubMed ID: 29950001
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Robust and accurate deconvolution of tumor populations uncovers evolutionary mechanisms of breast cancer metastasis.
    Tao Y; Lei H; Fu X; Lee AV; Ma J; Schwartz R
    Bioinformatics; 2020 Jul; 36(Suppl_1):i407-i416. PubMed ID: 32657393
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CLImAT-HET: detecting subclonal copy number alterations and loss of heterozygosity in heterogeneous tumor samples from whole-genome sequencing data.
    Yu Z; Li A; Wang M
    BMC Med Genomics; 2017 Mar; 10(1):15. PubMed ID: 28298214
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Phylogenetic analysis of multiprobe fluorescence in situ hybridization data from tumor cell populations.
    Chowdhury SA; Shackney SE; Heselmeyer-Haddad K; Ried T; Schäffer AA; Schwartz R
    Bioinformatics; 2013 Jul; 29(13):i189-98. PubMed ID: 23812984
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RobustClone: a robust PCA method for tumor clone and evolution inference from single-cell sequencing data.
    Chen Z; Gong F; Wan L; Ma L
    Bioinformatics; 2020 Jun; 36(11):3299-3306. PubMed ID: 32159762
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BiTSC 2: Bayesian inference of tumor clonal tree by joint analysis of single-cell SNV and CNA data.
    Chen Z; Gong F; Wan L; Ma L
    Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35368055
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity.
    Li Y; Xie X
    Bioinformatics; 2014 Aug; 30(15):2121-9. PubMed ID: 24695406
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Hierarchical discovery of large-scale and focal copy number alterations in low-coverage cancer genomes.
    Khalil AIS; Khyriem C; Chattopadhyay A; Sanyal A
    BMC Bioinformatics; 2020 Apr; 21(1):147. PubMed ID: 32299346
    [TBL] [Abstract][Full Text] [Related]  

  • 13. TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data.
    Ha G; Roth A; Khattra J; Ho J; Yap D; Prentice LM; Melnyk N; McPherson A; Bashashati A; Laks E; Biele J; Ding J; Le A; Rosner J; Shumansky K; Marra MA; Gilks CB; Huntsman DG; McAlpine JN; Aparicio S; Shah SP
    Genome Res; 2014 Nov; 24(11):1881-93. PubMed ID: 25060187
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Inferring cancer progression from Single-Cell Sequencing while allowing mutation losses.
    Ciccolella S; Ricketts C; Soto Gomez M; Patterson M; Silverbush D; Bonizzoni P; Hajirasouliha I; Della Vedova G
    Bioinformatics; 2021 Apr; 37(3):326-333. PubMed ID: 32805010
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Semi-deconvolution of bulk and single-cell RNA-seq data with application to metastatic progression in breast cancer.
    Lei H; Guo XA; Tao Y; Ding K; Fu X; Oesterreich S; Lee AV; Schwartz R
    Bioinformatics; 2022 Jun; 38(Suppl 1):i386-i394. PubMed ID: 35758822
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Accurity: accurate tumor purity and ploidy inference from tumor-normal WGS data by jointly modelling somatic copy number alterations and heterozygous germline single-nucleotide-variants.
    Luo Z; Fan X; Su Y; Huang YS
    Bioinformatics; 2018 Jun; 34(12):2004-2011. PubMed ID: 29385401
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem.
    Sadeqi Azer E; Rashidi Mehrabadi F; Malikić S; Li XC; Bartok O; Litchfield K; Levy R; Samuels Y; Schäffer AA; Gertz EM; Day CP; Pérez-Guijarro E; Marie K; Lee MP; Merlino G; Ergun F; Sahinalp SC
    Bioinformatics; 2020 Jul; 36(Suppl_1):i169-i176. PubMed ID: 32657358
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Sc-TUSV-ext: Single-cell clonal lineage inference from single nucleotide variants (SNV), copy number alterations (CNA) and structural variants (SV).
    Bristy NA; Fu X; Schwartz R
    bioRxiv; 2023 Dec; ():. PubMed ID: 38106049
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Tumor phylogeny inference using tree-constrained importance sampling.
    Satas G; Raphael BJ
    Bioinformatics; 2017 Jul; 33(14):i152-i160. PubMed ID: 28882002
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data.
    Yu Z; Li A; Wang M
    BMC Bioinformatics; 2016 Aug; 17():310. PubMed ID: 27538789
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.